Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
LRCH3Q96II8 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.72■□□□□ 0.59
LRCH3Q96II8 MXI1-205ENST00000393134 889 ntTSL 2 BASIC18.72■□□□□ 0.59
LRCH3Q96II8 HAUS4P1-201ENST00000406739 1145 ntBASIC18.72■□□□□ 0.59
LRCH3Q96II8 SPDYE7P-202ENST00000420373 878 ntBASIC18.72■□□□□ 0.59
LRCH3Q96II8 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC18.72■□□□□ 0.59
LRCH3Q96II8 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LRCH3Q96II8 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LRCH3Q96II8 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LRCH3Q96II8 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LRCH3Q96II8 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LRCH3Q96II8 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
LRCH3Q96II8 RN7SL589P-201ENST00000481268 310 ntBASIC18.72■□□□□ 0.59
LRCH3Q96II8 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC18.72■□□□□ 0.59
LRCH3Q96II8 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC18.72■□□□□ 0.59
LRCH3Q96II8 AC092552.1-201ENST00000547243 906 ntBASIC18.72■□□□□ 0.59
LRCH3Q96II8 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
LRCH3Q96II8 TP53TG3HP-202ENST00000569755 579 ntBASIC18.72■□□□□ 0.59
LRCH3Q96II8 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LRCH3Q96II8 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC18.72■□□□□ 0.59
LRCH3Q96II8 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC18.72■□□□□ 0.59
LRCH3Q96II8 RETN-203ENST00000629642 400 ntTSL 5 BASIC18.72■□□□□ 0.59
LRCH3Q96II8 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.72■□□□□ 0.59
LRCH3Q96II8 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
LRCH3Q96II8 CROCCP3-202ENST00000420820 1947 ntBASIC18.72■□□□□ 0.59
LRCH3Q96II8 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
LRCH3Q96II8 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.72■□□□□ 0.59
LRCH3Q96II8 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.72■□□□□ 0.59
LRCH3Q96II8 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LRCH3Q96II8 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LRCH3Q96II8 PI4KAP1-204ENST00000612579 1703 ntBASIC18.71■□□□□ 0.59
LRCH3Q96II8 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.71■□□□□ 0.59
LRCH3Q96II8 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LRCH3Q96II8 AL049812.1-201ENST00000432563 2267 ntBASIC18.71■□□□□ 0.59
LRCH3Q96II8 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
LRCH3Q96II8 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC18.71■□□□□ 0.59
LRCH3Q96II8 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC18.71■□□□□ 0.59
LRCH3Q96II8 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LRCH3Q96II8 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.71■□□□□ 0.59
LRCH3Q96II8 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LRCH3Q96II8 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
LRCH3Q96II8 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LRCH3Q96II8 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
LRCH3Q96II8 AC112492.5-201ENST00000421897 457 ntBASIC18.71■□□□□ 0.59
LRCH3Q96II8 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
LRCH3Q96II8 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC18.71■□□□□ 0.59
LRCH3Q96II8 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.71■□□□□ 0.59
LRCH3Q96II8 AL135744.1-201ENST00000565098 629 ntBASIC18.71■□□□□ 0.59
LRCH3Q96II8 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC18.71■□□□□ 0.59
LRCH3Q96II8 AL162274.1-201ENST00000617191 1098 ntBASIC18.71■□□□□ 0.59
LRCH3Q96II8 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.71■□□□□ 0.59
LRCH3Q96II8 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.71■□□□□ 0.59
LRCH3Q96II8 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.71■□□□□ 0.59
LRCH3Q96II8 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
LRCH3Q96II8 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
LRCH3Q96II8 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LRCH3Q96II8 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LRCH3Q96II8 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LRCH3Q96II8 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LRCH3Q96II8 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
LRCH3Q96II8 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
LRCH3Q96II8 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
LRCH3Q96II8 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC18.71■□□□□ 0.58
LRCH3Q96II8 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
LRCH3Q96II8 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRCH3Q96II8 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRCH3Q96II8 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRCH3Q96II8 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC18.7■□□□□ 0.58
LRCH3Q96II8 AL138781.2-201ENST00000617896 1843 ntBASIC18.7■□□□□ 0.58
LRCH3Q96II8 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.7■□□□□ 0.58
LRCH3Q96II8 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRCH3Q96II8 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC18.7■□□□□ 0.58
LRCH3Q96II8 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LRCH3Q96II8 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
LRCH3Q96II8 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
LRCH3Q96II8 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
LRCH3Q96II8 INE1-201ENST00000456273 945 ntBASIC18.7■□□□□ 0.58
LRCH3Q96II8 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
LRCH3Q96II8 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
LRCH3Q96II8 TMEM261P1-201ENST00000604899 340 ntBASIC18.7■□□□□ 0.58
LRCH3Q96II8 ACTL9-202ENST00000612068 1252 ntBASIC18.7■□□□□ 0.58
LRCH3Q96II8 MIR6080-201ENST00000617359 66 ntBASIC18.7■□□□□ 0.58
LRCH3Q96II8 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
LRCH3Q96II8 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.7■□□□□ 0.58
LRCH3Q96II8 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LRCH3Q96II8 AC104581.1-202ENST00000635932 2618 ntBASIC18.7■□□□□ 0.58
LRCH3Q96II8 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRCH3Q96II8 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRCH3Q96II8 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRCH3Q96II8 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRCH3Q96II8 REXO1L6P-201ENST00000603433 1515 ntBASIC18.69■□□□□ 0.58
LRCH3Q96II8 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRCH3Q96II8 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRCH3Q96II8 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.69■□□□□ 0.58
LRCH3Q96II8 GNAS-203ENST00000306120 1878 ntBASIC18.69■□□□□ 0.58
LRCH3Q96II8 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.69■□□□□ 0.58
LRCH3Q96II8 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRCH3Q96II8 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRCH3Q96II8 DCD-201ENST00000293371 645 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
LRCH3Q96II8 FAM86MP-201ENST00000340703 885 ntBASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms