Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC12.38□□□□□ -0.43
PRKDCP78527 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC12.38□□□□□ -0.43
PRKDCP78527 AC007967.4-201ENST00000614700 386 ntBASIC12.38□□□□□ -0.43
PRKDCP78527 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC12.38□□□□□ -0.43
PRKDCP78527 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC12.38□□□□□ -0.43
PRKDCP78527 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
PRKDCP78527 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
PRKDCP78527 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
PRKDCP78527 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
PRKDCP78527 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
PRKDCP78527 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
PRKDCP78527 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC12.38□□□□□ -0.43
PRKDCP78527 MIR4722-201ENST00000578292 60 ntBASIC12.38□□□□□ -0.43
PRKDCP78527 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC12.38□□□□□ -0.43
PRKDCP78527 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
PRKDCP78527 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
PRKDCP78527 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
PRKDCP78527 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC12.38□□□□□ -0.43
PRKDCP78527 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC12.38□□□□□ -0.43
PRKDCP78527 USB1-202ENST00000423271 1217 ntTSL 2 BASIC12.38□□□□□ -0.43
PRKDCP78527 AC108725.1-201ENST00000495472 409 ntBASIC12.38□□□□□ -0.43
PRKDCP78527 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC12.38□□□□□ -0.43
PRKDCP78527 AC018665.1-201ENST00000622927 1362 ntBASIC12.38□□□□□ -0.43
PRKDCP78527 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
PRKDCP78527 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC12.37□□□□□ -0.43
PRKDCP78527 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
PRKDCP78527 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
PRKDCP78527 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC12.37□□□□□ -0.43
PRKDCP78527 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
PRKDCP78527 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
PRKDCP78527 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
PRKDCP78527 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
PRKDCP78527 AL513480.1-201ENST00000451731 511 ntBASIC12.37□□□□□ -0.43
PRKDCP78527 IGHJ2P-201ENST00000454480 60 ntBASIC12.37□□□□□ -0.43
PRKDCP78527 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC12.37□□□□□ -0.43
PRKDCP78527 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
PRKDCP78527 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
PRKDCP78527 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
PRKDCP78527 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC12.37□□□□□ -0.43
PRKDCP78527 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
PRKDCP78527 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC12.37□□□□□ -0.43
PRKDCP78527 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
PRKDCP78527 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
PRKDCP78527 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
PRKDCP78527 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC12.37□□□□□ -0.43
PRKDCP78527 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
PRKDCP78527 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
PRKDCP78527 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
PRKDCP78527 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC12.37□□□□□ -0.43
PRKDCP78527 AC027307.2-201ENST00000591252 911 ntBASIC12.37□□□□□ -0.43
PRKDCP78527 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
PRKDCP78527 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
PRKDCP78527 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
PRKDCP78527 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC12.37□□□□□ -0.43
PRKDCP78527 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
PRKDCP78527 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
PRKDCP78527 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
PRKDCP78527 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC12.37□□□□□ -0.43
PRKDCP78527 NSL1-201ENST00000366976 722 ntTSL 2 BASIC12.37□□□□□ -0.43
PRKDCP78527 MIR1247-201ENST00000408206 136 ntBASIC12.37□□□□□ -0.43
PRKDCP78527 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
PRKDCP78527 GOLGA2P4-201ENST00000441462 777 ntBASIC12.37□□□□□ -0.43
PRKDCP78527 MYCLP2-201ENST00000449268 967 ntBASIC12.37□□□□□ -0.43
PRKDCP78527 AC093004.1-201ENST00000508850 424 ntBASIC12.37□□□□□ -0.43
PRKDCP78527 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC12.37□□□□□ -0.43
PRKDCP78527 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC12.37□□□□□ -0.43
PRKDCP78527 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 AC087499.5-201ENST00000452760 1342 ntBASIC12.36□□□□□ -0.43
PRKDCP78527 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC12.36□□□□□ -0.43
PRKDCP78527 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 AC098850.1-201ENST00000419919 790 ntBASIC12.36□□□□□ -0.43
PRKDCP78527 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC12.36□□□□□ -0.43
PRKDCP78527 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC12.36□□□□□ -0.43
PRKDCP78527 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC12.36□□□□□ -0.43
PRKDCP78527 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 CDC14C-201ENST00000428251 1719 ntBASIC12.36□□□□□ -0.43
PRKDCP78527 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC12.36□□□□□ -0.43
PRKDCP78527 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC12.36□□□□□ -0.43
PRKDCP78527 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC12.36□□□□□ -0.43
PRKDCP78527 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 AC015936.2-201ENST00000593177 259 ntBASIC12.36□□□□□ -0.43
PRKDCP78527 AC026740.1-201ENST00000607068 791 ntBASIC12.36□□□□□ -0.43
PRKDCP78527 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC12.36□□□□□ -0.43
PRKDCP78527 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC12.36□□□□□ -0.43
PRKDCP78527 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC12.36□□□□□ -0.43
PRKDCP78527 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
PRKDCP78527 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms