Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL8A1P27658 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
COL8A1P27658 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC15.15■□□□□ 0.02
COL8A1P27658 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC15.15■□□□□ 0.02
COL8A1P27658 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC15.15■□□□□ 0.02
COL8A1P27658 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL8A1P27658 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL8A1P27658 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
COL8A1P27658 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL8A1P27658 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL8A1P27658 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL8A1P27658 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL8A1P27658 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL8A1P27658 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC15.14■□□□□ 0.01
COL8A1P27658 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL8A1P27658 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC15.14■□□□□ 0.01
COL8A1P27658 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
COL8A1P27658 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL8A1P27658 TDG-209ENST00000544861 1387 ntTSL 2 BASIC15.14■□□□□ 0.01
COL8A1P27658 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL8A1P27658 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL8A1P27658 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
COL8A1P27658 AC093484.2-201ENST00000580996 2166 ntBASIC15.14■□□□□ 0.01
COL8A1P27658 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL8A1P27658 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL8A1P27658 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC15.14■□□□□ 0.01
COL8A1P27658 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL8A1P27658 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.14■□□□□ 0.01
COL8A1P27658 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC15.14■□□□□ 0.01
COL8A1P27658 COX5BP8-201ENST00000416911 349 ntBASIC15.14■□□□□ 0.01
COL8A1P27658 AL513480.1-201ENST00000451731 511 ntBASIC15.14■□□□□ 0.01
COL8A1P27658 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.14■□□□□ 0.01
COL8A1P27658 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
COL8A1P27658 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC15.14■□□□□ 0.01
COL8A1P27658 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC15.14■□□□□ 0.01
COL8A1P27658 SERBP1P5-201ENST00000510079 1181 ntBASIC15.14■□□□□ 0.01
COL8A1P27658 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC15.14■□□□□ 0.01
COL8A1P27658 BAD-207ENST00000544785 525 ntTSL 3 BASIC15.14■□□□□ 0.01
COL8A1P27658 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC15.14■□□□□ 0.01
COL8A1P27658 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL8A1P27658 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.14■□□□□ 0.01
COL8A1P27658 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.14■□□□□ 0.01
COL8A1P27658 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL8A1P27658 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
COL8A1P27658 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL8A1P27658 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL8A1P27658 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC15.14■□□□□ 0.01
COL8A1P27658 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL8A1P27658 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC15.14■□□□□ 0.01
COL8A1P27658 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL8A1P27658 AL049757.1-201ENST00000616842 1596 ntBASIC15.14■□□□□ 0.01
COL8A1P27658 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL8A1P27658 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
COL8A1P27658 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL8A1P27658 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL8A1P27658 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC15.14■□□□□ 0.01
COL8A1P27658 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
COL8A1P27658 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC15.14■□□□□ 0.01
COL8A1P27658 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL8A1P27658 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL8A1P27658 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC15.13■□□□□ 0.01
COL8A1P27658 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC15.13■□□□□ 0.01
COL8A1P27658 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC15.13■□□□□ 0.01
COL8A1P27658 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL8A1P27658 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL8A1P27658 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
COL8A1P27658 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC15.13■□□□□ 0.01
COL8A1P27658 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC15.13■□□□□ 0.01
COL8A1P27658 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL8A1P27658 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL8A1P27658 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL8A1P27658 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL8A1P27658 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC15.13■□□□□ 0.01
COL8A1P27658 VMA21-202ENST00000370361 693 ntTSL 5 BASIC15.13■□□□□ 0.01
COL8A1P27658 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC15.13■□□□□ 0.01
COL8A1P27658 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL8A1P27658 AL355306.1-201ENST00000415580 579 ntBASIC15.13■□□□□ 0.01
COL8A1P27658 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC15.13■□□□□ 0.01
COL8A1P27658 RBPMS2P1-201ENST00000437762 623 ntBASIC15.13■□□□□ 0.01
COL8A1P27658 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL8A1P27658 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC15.13■□□□□ 0.01
COL8A1P27658 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC15.13■□□□□ 0.01
COL8A1P27658 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL8A1P27658 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC15.13■□□□□ 0.01
COL8A1P27658 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL8A1P27658 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL8A1P27658 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL8A1P27658 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC15.13■□□□□ 0.01
COL8A1P27658 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC15.13■□□□□ 0.01
COL8A1P27658 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL8A1P27658 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.13■□□□□ 0.01
COL8A1P27658 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL8A1P27658 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
COL8A1P27658 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC15.13■□□□□ 0.01
COL8A1P27658 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL8A1P27658 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
COL8A1P27658 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL8A1P27658 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
COL8A1P27658 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL8A1P27658 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms