Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 AL845331.1-201ENST00000424978 1190 ntBASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 PCDHB19P-201ENST00000570871 2371 ntBASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 RNF216P1-203ENST00000404404 2427 ntBASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 AL645929.1-201ENST00000420084 975 ntBASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 AL671277.2-201ENST00000458060 996 ntBASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 AL592071.1-201ENST00000611956 408 ntBASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ATG4AQ8WYN0 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 AC018695.7-201ENST00000624587 2492 ntBASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 TSPY22P-201ENST00000427496 604 ntBASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 RN7SL606P-201ENST00000472779 293 ntBASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 AC022616.7-201ENST00000525383 220 ntBASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 AC005336.2-201ENST00000593183 939 ntBASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.04■□□□□ 0.48
ATG4AQ8WYN0 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms