Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
CX3CL1P78423 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC14.07□□□□□ -0.16
CX3CL1P78423 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC14.07□□□□□ -0.16
CX3CL1P78423 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CX3CL1P78423 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CX3CL1P78423 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CX3CL1P78423 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC14.07□□□□□ -0.16
CX3CL1P78423 AC233702.3-201ENST00000578656 1387 ntBASIC14.07□□□□□ -0.16
CX3CL1P78423 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CX3CL1P78423 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CX3CL1P78423 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC14.07□□□□□ -0.16
CX3CL1P78423 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC14.07□□□□□ -0.16
CX3CL1P78423 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC14.07□□□□□ -0.16
CX3CL1P78423 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CX3CL1P78423 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CX3CL1P78423 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CX3CL1P78423 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
CX3CL1P78423 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CX3CL1P78423 AC125634.1-201ENST00000438758 1403 ntBASIC14.07□□□□□ -0.16
CX3CL1P78423 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CX3CL1P78423 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CX3CL1P78423 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC14.06□□□□□ -0.16
CX3CL1P78423 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC14.06□□□□□ -0.16
CX3CL1P78423 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CX3CL1P78423 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
CX3CL1P78423 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CX3CL1P78423 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CX3CL1P78423 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CX3CL1P78423 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CX3CL1P78423 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
CX3CL1P78423 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CX3CL1P78423 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CX3CL1P78423 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC14.06□□□□□ -0.16
CX3CL1P78423 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
CX3CL1P78423 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CX3CL1P78423 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
CX3CL1P78423 ATP5G2P1-201ENST00000433580 426 ntBASIC14.06□□□□□ -0.16
CX3CL1P78423 LINC00265-3P-201ENST00000447588 903 ntBASIC14.06□□□□□ -0.16
CX3CL1P78423 AC091607.1-201ENST00000490318 1060 ntBASIC14.06□□□□□ -0.16
CX3CL1P78423 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CX3CL1P78423 MPI-205ENST00000562606 1052 ntTSL 3 BASIC14.06□□□□□ -0.16
CX3CL1P78423 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC14.06□□□□□ -0.16
CX3CL1P78423 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CX3CL1P78423 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC14.06□□□□□ -0.16
CX3CL1P78423 AC005336.2-201ENST00000593183 939 ntBASIC14.06□□□□□ -0.16
CX3CL1P78423 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CX3CL1P78423 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CX3CL1P78423 Z69720.1-201ENST00000601483 472 ntBASIC14.06□□□□□ -0.16
CX3CL1P78423 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC14.06□□□□□ -0.16
CX3CL1P78423 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CX3CL1P78423 NPAP1P7-201ENST00000613027 823 ntBASIC14.06□□□□□ -0.16
CX3CL1P78423 AC093458.2-201ENST00000623150 629 ntBASIC14.06□□□□□ -0.16
CX3CL1P78423 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC14.06□□□□□ -0.16
CX3CL1P78423 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CX3CL1P78423 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CX3CL1P78423 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC14.06□□□□□ -0.16
CX3CL1P78423 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CX3CL1P78423 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CX3CL1P78423 LTF-203ENST00000426532 2494 ntTSL 2 BASIC14.06□□□□□ -0.16
CX3CL1P78423 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC14.06□□□□□ -0.16
CX3CL1P78423 AC018695.7-201ENST00000624587 2492 ntBASIC14.06□□□□□ -0.16
CX3CL1P78423 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
CX3CL1P78423 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CX3CL1P78423 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CX3CL1P78423 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CX3CL1P78423 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC14.06□□□□□ -0.16
CX3CL1P78423 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CX3CL1P78423 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC14.06□□□□□ -0.16
CX3CL1P78423 AC046158.3-201ENST00000624947 2558 ntBASIC14.06□□□□□ -0.16
CX3CL1P78423 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CX3CL1P78423 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CX3CL1P78423 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CX3CL1P78423 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CX3CL1P78423 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CX3CL1P78423 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CX3CL1P78423 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC14.06□□□□□ -0.16
CX3CL1P78423 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CL1P78423 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CX3CL1P78423 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
CX3CL1P78423 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC14.05□□□□□ -0.16
CX3CL1P78423 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
CX3CL1P78423 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CL1P78423 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CL1P78423 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CL1P78423 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC14.05□□□□□ -0.16
CX3CL1P78423 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CL1P78423 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CL1P78423 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CL1P78423 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CL1P78423 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CL1P78423 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
CX3CL1P78423 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CL1P78423 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CL1P78423 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
CX3CL1P78423 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CL1P78423 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC14.05□□□□□ -0.16
CX3CL1P78423 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC14.05□□□□□ -0.16
CX3CL1P78423 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC14.05□□□□□ -0.16
CX3CL1P78423 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CL1P78423 MIR3180-1-201ENST00000580374 94 ntBASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms