Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RNF4P78317 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RNF4P78317 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF4P78317 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF4P78317 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.12■□□□□ 0.17
RNF4P78317 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RNF4P78317 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF4P78317 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF4P78317 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF4P78317 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RNF4P78317 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF4P78317 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF4P78317 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.12■□□□□ 0.17
RNF4P78317 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
RNF4P78317 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.12■□□□□ 0.17
RNF4P78317 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RNF4P78317 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.12■□□□□ 0.17
RNF4P78317 LAGE3P1-201ENST00000425356 484 ntBASIC16.12■□□□□ 0.17
RNF4P78317 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.12■□□□□ 0.17
RNF4P78317 AC139887.3-201ENST00000568585 713 ntBASIC16.12■□□□□ 0.17
RNF4P78317 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.12■□□□□ 0.17
RNF4P78317 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF4P78317 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.12■□□□□ 0.17
RNF4P78317 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF4P78317 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.12■□□□□ 0.17
RNF4P78317 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.12■□□□□ 0.17
RNF4P78317 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RNF4P78317 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.12■□□□□ 0.17
RNF4P78317 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RNF4P78317 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.12■□□□□ 0.17
RNF4P78317 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RNF4P78317 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.11■□□□□ 0.17
RNF4P78317 NCF1C-201ENST00000438382 1427 ntBASIC16.11■□□□□ 0.17
RNF4P78317 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RNF4P78317 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF4P78317 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RNF4P78317 AC097637.2-201ENST00000624096 1997 ntBASIC16.11■□□□□ 0.17
RNF4P78317 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF4P78317 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF4P78317 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF4P78317 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF4P78317 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF4P78317 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.11■□□□□ 0.17
RNF4P78317 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.11■□□□□ 0.17
RNF4P78317 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF4P78317 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.11■□□□□ 0.17
RNF4P78317 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF4P78317 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF4P78317 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.11■□□□□ 0.17
RNF4P78317 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.11■□□□□ 0.17
RNF4P78317 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.11■□□□□ 0.17
RNF4P78317 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
RNF4P78317 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.11■□□□□ 0.17
RNF4P78317 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.11■□□□□ 0.17
RNF4P78317 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.11■□□□□ 0.17
RNF4P78317 AL049840.3-201ENST00000602669 611 ntBASIC16.11■□□□□ 0.17
RNF4P78317 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.11■□□□□ 0.17
RNF4P78317 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.11■□□□□ 0.17
RNF4P78317 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
RNF4P78317 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF4P78317 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
RNF4P78317 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.11■□□□□ 0.17
RNF4P78317 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.11■□□□□ 0.17
RNF4P78317 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.11■□□□□ 0.17
RNF4P78317 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF4P78317 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RNF4P78317 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
RNF4P78317 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF4P78317 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
RNF4P78317 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF4P78317 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF4P78317 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.1■□□□□ 0.17
RNF4P78317 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF4P78317 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.1■□□□□ 0.17
RNF4P78317 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RNF4P78317 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF4P78317 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
RNF4P78317 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.1■□□□□ 0.17
RNF4P78317 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF4P78317 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.1■□□□□ 0.17
RNF4P78317 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.1■□□□□ 0.17
RNF4P78317 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RNF4P78317 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF4P78317 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF4P78317 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
RNF4P78317 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF4P78317 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF4P78317 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF4P78317 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.1■□□□□ 0.17
RNF4P78317 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF4P78317 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.1■□□□□ 0.17
RNF4P78317 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC16.1■□□□□ 0.17
RNF4P78317 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
RNF4P78317 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.1■□□□□ 0.17
RNF4P78317 MIR7706-201ENST00000613747 67 ntBASIC16.1■□□□□ 0.17
RNF4P78317 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
RNF4P78317 AC008735.5-201ENST00000623544 497 ntBASIC16.1■□□□□ 0.17
RNF4P78317 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF4P78317 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF4P78317 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms