Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 HOTTIP_1.1-201ENST00000620415 57 ntBASIC19.09■□□□□ 0.65
CLCN3P51790 AC055717.3-201ENST00000622967 595 ntBASIC19.09■□□□□ 0.65
CLCN3P51790 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLCN3P51790 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLCN3P51790 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLCN3P51790 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
CLCN3P51790 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLCN3P51790 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC19.09■□□□□ 0.65
CLCN3P51790 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLCN3P51790 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CLCN3P51790 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLCN3P51790 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC19.08■□□□□ 0.65
CLCN3P51790 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.08■□□□□ 0.65
CLCN3P51790 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC19.08■□□□□ 0.65
CLCN3P51790 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
CLCN3P51790 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
CLCN3P51790 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC19.08■□□□□ 0.65
CLCN3P51790 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
CLCN3P51790 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CLCN3P51790 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLCN3P51790 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLCN3P51790 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLCN3P51790 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC19.08■□□□□ 0.64
CLCN3P51790 MAL2-202ENST00000531508 892 ntTSL 3 BASIC19.08■□□□□ 0.64
CLCN3P51790 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC19.08■□□□□ 0.64
CLCN3P51790 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC19.08■□□□□ 0.64
CLCN3P51790 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
CLCN3P51790 AC092865.6-201ENST00000642101 219 ntBASIC19.08■□□□□ 0.64
CLCN3P51790 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CLCN3P51790 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLCN3P51790 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CLCN3P51790 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLCN3P51790 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CLCN3P51790 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLCN3P51790 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLCN3P51790 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLCN3P51790 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLCN3P51790 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CLCN3P51790 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CLCN3P51790 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
CLCN3P51790 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLCN3P51790 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC19.07■□□□□ 0.64
CLCN3P51790 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLCN3P51790 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLCN3P51790 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLCN3P51790 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLCN3P51790 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLCN3P51790 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLCN3P51790 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLCN3P51790 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLCN3P51790 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
CLCN3P51790 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC19.07■□□□□ 0.64
CLCN3P51790 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC19.07■□□□□ 0.64
CLCN3P51790 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC19.07■□□□□ 0.64
CLCN3P51790 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLCN3P51790 POLD4-207ENST00000531239 584 ntTSL 2 BASIC19.07■□□□□ 0.64
CLCN3P51790 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLCN3P51790 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC19.07■□□□□ 0.64
CLCN3P51790 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLCN3P51790 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLCN3P51790 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLCN3P51790 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
CLCN3P51790 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
CLCN3P51790 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLCN3P51790 AC133963.1-201ENST00000504166 1679 ntBASIC19.07■□□□□ 0.64
CLCN3P51790 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLCN3P51790 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC19.07■□□□□ 0.64
CLCN3P51790 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC19.06■□□□□ 0.64
CLCN3P51790 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLCN3P51790 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLCN3P51790 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.06■□□□□ 0.64
CLCN3P51790 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLCN3P51790 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC19.06■□□□□ 0.64
CLCN3P51790 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLCN3P51790 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC19.06■□□□□ 0.64
CLCN3P51790 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLCN3P51790 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLCN3P51790 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC19.06■□□□□ 0.64
CLCN3P51790 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.06■□□□□ 0.64
CLCN3P51790 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC19.06■□□□□ 0.64
CLCN3P51790 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLCN3P51790 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLCN3P51790 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC19.06■□□□□ 0.64
CLCN3P51790 AC112482.1-201ENST00000492080 688 ntBASIC19.06■□□□□ 0.64
CLCN3P51790 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLCN3P51790 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC19.06■□□□□ 0.64
CLCN3P51790 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC19.06■□□□□ 0.64
CLCN3P51790 GGTLC5P-201ENST00000617623 998 ntBASIC19.06■□□□□ 0.64
CLCN3P51790 AL513190.1-201ENST00000621254 727 ntBASIC19.06■□□□□ 0.64
CLCN3P51790 AC010507.1-201ENST00000633895 436 ntBASIC19.06■□□□□ 0.64
CLCN3P51790 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLCN3P51790 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLCN3P51790 AC018470.1-201ENST00000624790 3129 ntBASIC19.06■□□□□ 0.64
CLCN3P51790 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC19.06■□□□□ 0.64
CLCN3P51790 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLCN3P51790 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLCN3P51790 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLCN3P51790 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLCN3P51790 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLCN3P51790 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms