Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 NSUN5P1-202ENST00000421140 1535 ntBASIC16.71■□□□□ 0.27
SEMA3DO95025 NSUN5P2-203ENST00000457352 1529 ntBASIC16.71■□□□□ 0.27
SEMA3DO95025 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SEMA3DO95025 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SEMA3DO95025 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
SEMA3DO95025 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.71■□□□□ 0.27
SEMA3DO95025 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.71■□□□□ 0.27
SEMA3DO95025 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SEMA3DO95025 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.71■□□□□ 0.27
SEMA3DO95025 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
SEMA3DO95025 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
SEMA3DO95025 MIR1224-201ENST00000408193 85 ntBASIC16.71■□□□□ 0.27
SEMA3DO95025 IGHV3-47-201ENST00000425060 335 ntBASIC16.71■□□□□ 0.27
SEMA3DO95025 MINOS1P3-201ENST00000457048 203 ntBASIC16.71■□□□□ 0.27
SEMA3DO95025 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.71■□□□□ 0.27
SEMA3DO95025 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
SEMA3DO95025 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
SEMA3DO95025 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SEMA3DO95025 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SEMA3DO95025 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
SEMA3DO95025 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
SEMA3DO95025 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SEMA3DO95025 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SEMA3DO95025 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SEMA3DO95025 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.71■□□□□ 0.26
SEMA3DO95025 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
SEMA3DO95025 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SEMA3DO95025 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SEMA3DO95025 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.7■□□□□ 0.26
SEMA3DO95025 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.7■□□□□ 0.26
SEMA3DO95025 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
SEMA3DO95025 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SEMA3DO95025 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.7■□□□□ 0.26
SEMA3DO95025 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.7■□□□□ 0.26
SEMA3DO95025 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
SEMA3DO95025 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SEMA3DO95025 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
SEMA3DO95025 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
SEMA3DO95025 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
SEMA3DO95025 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SEMA3DO95025 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SEMA3DO95025 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.7■□□□□ 0.26
SEMA3DO95025 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
SEMA3DO95025 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.7■□□□□ 0.26
SEMA3DO95025 STK25P1-201ENST00000585406 838 ntBASIC16.7■□□□□ 0.26
SEMA3DO95025 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.7■□□□□ 0.26
SEMA3DO95025 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
SEMA3DO95025 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.7■□□□□ 0.26
SEMA3DO95025 BNIP3P18-201ENST00000593976 575 ntBASIC16.7■□□□□ 0.26
SEMA3DO95025 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
SEMA3DO95025 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SEMA3DO95025 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
SEMA3DO95025 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.7■□□□□ 0.26
SEMA3DO95025 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.7■□□□□ 0.26
SEMA3DO95025 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.7■□□□□ 0.26
SEMA3DO95025 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.7■□□□□ 0.26
SEMA3DO95025 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SEMA3DO95025 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SEMA3DO95025 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.7■□□□□ 0.26
SEMA3DO95025 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SEMA3DO95025 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SEMA3DO95025 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SEMA3DO95025 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SEMA3DO95025 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
SEMA3DO95025 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
SEMA3DO95025 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
SEMA3DO95025 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.69■□□□□ 0.26
SEMA3DO95025 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.69■□□□□ 0.26
SEMA3DO95025 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.69■□□□□ 0.26
SEMA3DO95025 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.69■□□□□ 0.26
SEMA3DO95025 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.69■□□□□ 0.26
SEMA3DO95025 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.69■□□□□ 0.26
SEMA3DO95025 AC012615.1-201ENST00000565797 1299 ntBASIC16.69■□□□□ 0.26
SEMA3DO95025 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.69■□□□□ 0.26
SEMA3DO95025 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.69■□□□□ 0.26
SEMA3DO95025 NT5C-211ENST00000582170 653 ntTSL 3 BASIC16.69■□□□□ 0.26
SEMA3DO95025 AC092329.2-201ENST00000598402 547 ntBASIC16.69■□□□□ 0.26
SEMA3DO95025 AC114341.1-201ENST00000618070 349 ntBASIC16.69■□□□□ 0.26
SEMA3DO95025 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms