Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
CACNA1FO60840 AL513480.1-201ENST00000451731 511 ntBASIC21.7■■□□□ 1.07
CACNA1FO60840 KRT19P2-202ENST00000557173 1012 ntBASIC21.7■■□□□ 1.07
CACNA1FO60840 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC21.7■■□□□ 1.07
CACNA1FO60840 AC007064.4-201ENST00000637740 555 ntBASIC21.7■■□□□ 1.07
CACNA1FO60840 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
CACNA1FO60840 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC21.7■■□□□ 1.06
CACNA1FO60840 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CACNA1FO60840 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CACNA1FO60840 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC21.7■■□□□ 1.06
CACNA1FO60840 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
CACNA1FO60840 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CACNA1FO60840 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC21.7■■□□□ 1.06
CACNA1FO60840 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC21.7■■□□□ 1.06
CACNA1FO60840 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CACNA1FO60840 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CACNA1FO60840 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC21.7■■□□□ 1.06
CACNA1FO60840 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CACNA1FO60840 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC21.69■■□□□ 1.06
CACNA1FO60840 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
CACNA1FO60840 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CACNA1FO60840 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC21.69■■□□□ 1.06
CACNA1FO60840 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CACNA1FO60840 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CACNA1FO60840 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC21.69■■□□□ 1.06
CACNA1FO60840 TUBB8P12-201ENST00000308911 1335 ntBASIC21.69■■□□□ 1.06
CACNA1FO60840 TUBB7P-202ENST00000428444 1305 ntBASIC21.69■■□□□ 1.06
CACNA1FO60840 TUBB8P7-204ENST00000567960 1332 ntBASIC21.69■■□□□ 1.06
CACNA1FO60840 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
CACNA1FO60840 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CACNA1FO60840 MCCD1P2-201ENST00000423228 335 ntBASIC21.69■■□□□ 1.06
CACNA1FO60840 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC21.69■■□□□ 1.06
CACNA1FO60840 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC21.69■■□□□ 1.06
CACNA1FO60840 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
CACNA1FO60840 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CACNA1FO60840 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
CACNA1FO60840 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CACNA1FO60840 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CACNA1FO60840 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CACNA1FO60840 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CACNA1FO60840 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC21.68■■□□□ 1.06
CACNA1FO60840 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
CACNA1FO60840 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC21.68■■□□□ 1.06
CACNA1FO60840 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CACNA1FO60840 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CACNA1FO60840 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC21.68■■□□□ 1.06
CACNA1FO60840 HARS-203ENST00000431330 1774 ntTSL 2 BASIC21.68■■□□□ 1.06
CACNA1FO60840 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CACNA1FO60840 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC21.68■■□□□ 1.06
CACNA1FO60840 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC21.68■■□□□ 1.06
CACNA1FO60840 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC21.68■■□□□ 1.06
CACNA1FO60840 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CACNA1FO60840 PMS2P7-201ENST00000506558 1336 ntBASIC21.68■■□□□ 1.06
CACNA1FO60840 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC21.68■■□□□ 1.06
CACNA1FO60840 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CACNA1FO60840 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CACNA1FO60840 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CACNA1FO60840 PI4KAP1-204ENST00000612579 1703 ntBASIC21.68■■□□□ 1.06
CACNA1FO60840 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CACNA1FO60840 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CACNA1FO60840 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CACNA1FO60840 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CACNA1FO60840 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CACNA1FO60840 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CACNA1FO60840 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC21.67■■□□□ 1.06
CACNA1FO60840 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
CACNA1FO60840 AC131009.4-201ENST00000624048 1740 ntBASIC21.67■■□□□ 1.06
CACNA1FO60840 AC120498.9-201ENST00000339021 3867 ntBASIC21.67■■□□□ 1.06
CACNA1FO60840 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC21.67■■□□□ 1.06
CACNA1FO60840 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
CACNA1FO60840 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC21.67■■□□□ 1.06
CACNA1FO60840 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC21.67■■□□□ 1.06
CACNA1FO60840 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC21.67■■□□□ 1.06
CACNA1FO60840 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC21.67■■□□□ 1.06
CACNA1FO60840 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC21.67■■□□□ 1.06
CACNA1FO60840 AC108860.2-201ENST00000562760 2183 ntBASIC21.67■■□□□ 1.06
CACNA1FO60840 PCDHB18P-201ENST00000524813 2368 ntBASIC21.67■■□□□ 1.06
CACNA1FO60840 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CACNA1FO60840 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CACNA1FO60840 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CACNA1FO60840 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
CACNA1FO60840 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CACNA1FO60840 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CACNA1FO60840 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC21.67■■□□□ 1.06
CACNA1FO60840 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
CACNA1FO60840 VN2R19P-201ENST00000442399 1052 ntBASIC21.67■■□□□ 1.06
CACNA1FO60840 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
CACNA1FO60840 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC21.67■■□□□ 1.06
CACNA1FO60840 COX5A-206ENST00000568783 571 ntTSL 3 BASIC21.67■■□□□ 1.06
CACNA1FO60840 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CACNA1FO60840 ACTL9-202ENST00000612068 1252 ntBASIC21.67■■□□□ 1.06
CACNA1FO60840 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC21.67■■□□□ 1.06
CACNA1FO60840 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CACNA1FO60840 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC21.67■■□□□ 1.06
CACNA1FO60840 AL023806.1-201ENST00000603994 1649 ntBASIC21.66■■□□□ 1.06
CACNA1FO60840 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC21.66■■□□□ 1.06
CACNA1FO60840 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC21.66■■□□□ 1.06
CACNA1FO60840 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CACNA1FO60840 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CACNA1FO60840 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms