Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 AC073592.3-201ENST00000625118 1834 ntBASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 AC109322.1-201ENST00000524499 1264 ntBASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 AC190387.1-201ENST00000551683 408 ntBASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 DUT-210ENST00000559935 569 ntTSL 3 BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 AC138761.1-201ENST00000584393 385 ntBASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 AC005498.2-205ENST00000593218 784 ntBASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 PODN-203ENST00000395871 2744 ntTSL 5 BASIC16.69■□□□□ 0.26
PCDHGA1Q9Y5H4 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 AC002056.1-201ENST00000395613 760 ntBASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 WBP2-203ENST00000433525 928 ntTSL 2 BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 FAM86C2P-203ENST00000528684 1004 ntBASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 AC126763.1-201ENST00000552015 2118 ntBASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 MIR4745-201ENST00000577608 62 ntBASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 AJ011932.1-201ENST00000621707 465 ntBASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 NEFHP1-201ENST00000412845 2629 ntBASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 EFTUD1P1-204ENST00000560401 1798 ntBASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 AL031598.1-201ENST00000561511 1773 ntBASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA1Q9Y5H4 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 ADH5P3-201ENST00000433842 1137 ntBASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.67■□□□□ 0.26
PCDHGA1Q9Y5H4 AC009093.7-201ENST00000623853 1223 ntBASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms