Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 AC003669.1-201ENST00000334569 611 ntBASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 POM121L3P-201ENST00000419331 1163 ntBASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 NSUN5P1-202ENST00000421140 1535 ntBASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 NSUN5P2-203ENST00000457352 1529 ntBASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 AC116353.5-201ENST00000638148 1699 ntBASIC17.36■□□□□ 0.37
VPS9D1Q9Y2B5 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 ARMC10P1-201ENST00000313754 855 ntBASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 AC091607.1-201ENST00000490318 1060 ntBASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 AC104819.1-201ENST00000504587 486 ntBASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 AC012615.1-201ENST00000565797 1299 ntBASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 KRT8P10-201ENST00000450021 1447 ntBASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.35■□□□□ 0.37
VPS9D1Q9Y2B5 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS9D1Q9Y2B5 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
VPS9D1Q9Y2B5 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS9D1Q9Y2B5 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
VPS9D1Q9Y2B5 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS9D1Q9Y2B5 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS9D1Q9Y2B5 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS9D1Q9Y2B5 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS9D1Q9Y2B5 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
VPS9D1Q9Y2B5 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS9D1Q9Y2B5 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.34■□□□□ 0.37
VPS9D1Q9Y2B5 IGHV3-47-201ENST00000425060 335 ntBASIC17.34■□□□□ 0.37
VPS9D1Q9Y2B5 ATP5G2P1-201ENST00000433580 426 ntBASIC17.34■□□□□ 0.37
VPS9D1Q9Y2B5 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC17.34■□□□□ 0.37
VPS9D1Q9Y2B5 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS9D1Q9Y2B5 AC096582.2-201ENST00000510860 516 ntBASIC17.34■□□□□ 0.37
VPS9D1Q9Y2B5 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.34■□□□□ 0.37
VPS9D1Q9Y2B5 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS9D1Q9Y2B5 AC092329.2-201ENST00000598402 547 ntBASIC17.34■□□□□ 0.37
VPS9D1Q9Y2B5 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.34■□□□□ 0.37
VPS9D1Q9Y2B5 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.34■□□□□ 0.37
VPS9D1Q9Y2B5 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS9D1Q9Y2B5 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS9D1Q9Y2B5 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS9D1Q9Y2B5 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.34■□□□□ 0.37
VPS9D1Q9Y2B5 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
VPS9D1Q9Y2B5 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
VPS9D1Q9Y2B5 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
VPS9D1Q9Y2B5 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.33■□□□□ 0.37
VPS9D1Q9Y2B5 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.33■□□□□ 0.37
VPS9D1Q9Y2B5 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
VPS9D1Q9Y2B5 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.33■□□□□ 0.37
VPS9D1Q9Y2B5 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
VPS9D1Q9Y2B5 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms