Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USP28Q96RU2 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
USP28Q96RU2 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP28Q96RU2 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USP28Q96RU2 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP28Q96RU2 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
USP28Q96RU2 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC19.93■□□□□ 0.78
USP28Q96RU2 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP28Q96RU2 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
USP28Q96RU2 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP28Q96RU2 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP28Q96RU2 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP28Q96RU2 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP28Q96RU2 FAM220CP-201ENST00000395253 831 ntBASIC19.93■□□□□ 0.78
USP28Q96RU2 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC19.93■□□□□ 0.78
USP28Q96RU2 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC19.93■□□□□ 0.78
USP28Q96RU2 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USP28Q96RU2 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP28Q96RU2 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC19.93■□□□□ 0.78
USP28Q96RU2 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USP28Q96RU2 AL121956.5-201ENST00000625261 221 ntBASIC19.93■□□□□ 0.78
USP28Q96RU2 UBALD1-205ENST00000590891 2641 ntBASIC19.93■□□□□ 0.78
USP28Q96RU2 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP28Q96RU2 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
USP28Q96RU2 AC016734.2-201ENST00000624325 1377 ntBASIC19.93■□□□□ 0.78
USP28Q96RU2 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP28Q96RU2 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP28Q96RU2 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP28Q96RU2 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
USP28Q96RU2 AL353593.2-201ENST00000602529 1483 ntBASIC19.92■□□□□ 0.78
USP28Q96RU2 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP28Q96RU2 AL118508.1-201ENST00000613502 2345 ntBASIC19.92■□□□□ 0.78
USP28Q96RU2 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
USP28Q96RU2 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC19.92■□□□□ 0.78
USP28Q96RU2 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP28Q96RU2 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP28Q96RU2 AC246785.2-201ENST00000432512 513 ntBASIC19.92■□□□□ 0.78
USP28Q96RU2 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.92■□□□□ 0.78
USP28Q96RU2 FAM86EP-206ENST00000510506 987 ntBASIC19.92■□□□□ 0.78
USP28Q96RU2 KRT18P21-201ENST00000515767 1272 ntBASIC19.92■□□□□ 0.78
USP28Q96RU2 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC19.92■□□□□ 0.78
USP28Q96RU2 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC19.92■□□□□ 0.78
USP28Q96RU2 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC19.92■□□□□ 0.78
USP28Q96RU2 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC19.92■□□□□ 0.78
USP28Q96RU2 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC19.92■□□□□ 0.78
USP28Q96RU2 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC19.92■□□□□ 0.78
USP28Q96RU2 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP28Q96RU2 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP28Q96RU2 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USP28Q96RU2 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP28Q96RU2 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP28Q96RU2 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP28Q96RU2 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USP28Q96RU2 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC19.91■□□□□ 0.78
USP28Q96RU2 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP28Q96RU2 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC19.91■□□□□ 0.78
USP28Q96RU2 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
USP28Q96RU2 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USP28Q96RU2 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
USP28Q96RU2 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
USP28Q96RU2 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP28Q96RU2 ENSA-206ENST00000361631 725 ntTSL 2 BASIC19.91■□□□□ 0.78
USP28Q96RU2 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP28Q96RU2 AC103564.2-201ENST00000432853 1299 ntBASIC19.91■□□□□ 0.78
USP28Q96RU2 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC19.91■□□□□ 0.78
USP28Q96RU2 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USP28Q96RU2 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC19.91■□□□□ 0.78
USP28Q96RU2 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC19.91■□□□□ 0.78
USP28Q96RU2 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.91■□□□□ 0.78
USP28Q96RU2 NTF6B-201ENST00000591913 560 ntBASIC19.91■□□□□ 0.78
USP28Q96RU2 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
USP28Q96RU2 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.91■□□□□ 0.78
USP28Q96RU2 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP28Q96RU2 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
USP28Q96RU2 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP28Q96RU2 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19.91■□□□□ 0.78
USP28Q96RU2 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP28Q96RU2 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP28Q96RU2 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP28Q96RU2 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USP28Q96RU2 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC19.91■□□□□ 0.78
USP28Q96RU2 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC19.91■□□□□ 0.78
USP28Q96RU2 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC19.91■□□□□ 0.78
USP28Q96RU2 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP28Q96RU2 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP28Q96RU2 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USP28Q96RU2 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP28Q96RU2 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP28Q96RU2 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP28Q96RU2 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
USP28Q96RU2 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP28Q96RU2 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC19.9■□□□□ 0.78
USP28Q96RU2 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC19.9■□□□□ 0.78
USP28Q96RU2 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP28Q96RU2 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC19.9■□□□□ 0.78
USP28Q96RU2 AC092068.3-201ENST00000587894 2016 ntBASIC19.9■□□□□ 0.78
USP28Q96RU2 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP28Q96RU2 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP28Q96RU2 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
USP28Q96RU2 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms