Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AL355312.1-201ENST00000407115 2176 ntBASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.47■□□□□ 0.23
PTCHD1Q96NR3 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 MYCLP1-201ENST00000372451 1075 ntBASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 KLF4P1-201ENST00000412782 1185 ntBASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 AP002469.2-201ENST00000531724 424 ntBASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 NKAPP1-205ENST00000585790 367 ntBASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 TP73-AS1-207ENST00000624167 988 ntBASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 AC132938.5-201ENST00000624980 1813 ntBASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTCHD1Q96NR3 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
PTCHD1Q96NR3 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.46■□□□□ 0.22
PTCHD1Q96NR3 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.46■□□□□ 0.22
PTCHD1Q96NR3 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.46■□□□□ 0.22
PTCHD1Q96NR3 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.46■□□□□ 0.22
PTCHD1Q96NR3 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 AC079776.2-201ENST00000641154 1609 ntBASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 AC003669.1-201ENST00000334569 611 ntBASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 STK19B-204ENST00000512515 211 ntBASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 SART3-203ENST00000546611 1184 ntBASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 AL139288.1-201ENST00000623748 933 ntBASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.45■□□□□ 0.22
PTCHD1Q96NR3 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 LINC00304-203ENST00000565008 1864 ntBASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 AL020989.1-201ENST00000422979 469 ntBASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms