Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 AC097374.2-201ENST00000618617 1306 ntBASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLIP3Q96DZ5 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 RPS2P28-201ENST00000314255 741 ntBASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 MADD-208ENST00000405573 1823 ntTSL 5 BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLIP3Q96DZ5 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 EFTUD1P1-204ENST00000560401 1798 ntBASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 DUTP2-201ENST00000519164 463 ntBASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 BX640515.1-201ENST00000617215 977 ntBASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLIP3Q96DZ5 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.84■□□□□ 0.29
CLIP3Q96DZ5 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms