Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 KLF4P1-201ENST00000412782 1185 ntBASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 SRP19-202ENST00000445150 833 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 FICD-205ENST00000552758 603 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 AC138894.3-201ENST00000603787 634 ntBASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 AC132938.5-201ENST00000624980 1813 ntBASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC65Q8IXS2 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 LTB4R2-202ENST00000528054 3092 ntBASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 KRT16P4-201ENST00000453883 522 ntBASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 MIR3652-201ENST00000579335 131 ntBASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 AL591684.3-201ENST00000605187 298 ntBASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 AC009336.1-201ENST00000608941 1553 ntBASIC19.36■□□□□ 0.69
CCDC65Q8IXS2 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC65Q8IXS2 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC65Q8IXS2 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC65Q8IXS2 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC65Q8IXS2 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19.35■□□□□ 0.69
CCDC65Q8IXS2 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC19.35■□□□□ 0.69
CCDC65Q8IXS2 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC65Q8IXS2 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC19.35■□□□□ 0.69
CCDC65Q8IXS2 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC19.35■□□□□ 0.69
CCDC65Q8IXS2 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
CCDC65Q8IXS2 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC65Q8IXS2 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC19.35■□□□□ 0.69
CCDC65Q8IXS2 PMPCAP1-201ENST00000508114 1576 ntBASIC19.35■□□□□ 0.69
CCDC65Q8IXS2 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC65Q8IXS2 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC65Q8IXS2 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
CCDC65Q8IXS2 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC19.35■□□□□ 0.69
CCDC65Q8IXS2 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
CCDC65Q8IXS2 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC65Q8IXS2 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
CCDC65Q8IXS2 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC65Q8IXS2 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
CCDC65Q8IXS2 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC19.34■□□□□ 0.69
CCDC65Q8IXS2 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC65Q8IXS2 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC65Q8IXS2 AC116353.5-201ENST00000638148 1699 ntBASIC19.34■□□□□ 0.69
CCDC65Q8IXS2 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC65Q8IXS2 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC19.34■□□□□ 0.69
CCDC65Q8IXS2 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC19.34■□□□□ 0.69
CCDC65Q8IXS2 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
CCDC65Q8IXS2 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC65Q8IXS2 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC65Q8IXS2 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
CCDC65Q8IXS2 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC65Q8IXS2 NUS1P1-201ENST00000446295 882 ntBASIC19.34■□□□□ 0.69
CCDC65Q8IXS2 FOSL1P1-201ENST00000511041 816 ntBASIC19.34■□□□□ 0.69
CCDC65Q8IXS2 NMU-205ENST00000511469 756 ntTSL 3 BASIC19.34■□□□□ 0.69
CCDC65Q8IXS2 COX5A-202ENST00000562233 441 ntTSL 3 BASIC19.34■□□□□ 0.69
CCDC65Q8IXS2 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC19.34■□□□□ 0.69
CCDC65Q8IXS2 AP000867.4-201ENST00000641616 219 ntBASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms