Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
NIPAL3Q6P499 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
NIPAL3Q6P499 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
NIPAL3Q6P499 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
NIPAL3Q6P499 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
NIPAL3Q6P499 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC15.9■□□□□ 0.14
NIPAL3Q6P499 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
NIPAL3Q6P499 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
NIPAL3Q6P499 AL118508.1-201ENST00000613502 2345 ntBASIC15.9■□□□□ 0.14
NIPAL3Q6P499 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
NIPAL3Q6P499 KRT18P1-202ENST00000452408 1331 ntBASIC15.9■□□□□ 0.14
NIPAL3Q6P499 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
NIPAL3Q6P499 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
NIPAL3Q6P499 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 AC011840.4-201ENST00000578471 627 ntBASIC15.89■□□□□ 0.13
NIPAL3Q6P499 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 AC093458.2-201ENST00000623150 629 ntBASIC15.89■□□□□ 0.13
NIPAL3Q6P499 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NIPAL3Q6P499 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 RN7SL606P-201ENST00000472779 293 ntBASIC15.88■□□□□ 0.13
NIPAL3Q6P499 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC15.88■□□□□ 0.13
NIPAL3Q6P499 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
NIPAL3Q6P499 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
NIPAL3Q6P499 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
NIPAL3Q6P499 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
NIPAL3Q6P499 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NIPAL3Q6P499 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
NIPAL3Q6P499 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
NIPAL3Q6P499 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
NIPAL3Q6P499 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
NIPAL3Q6P499 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
NIPAL3Q6P499 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC15.87■□□□□ 0.13
NIPAL3Q6P499 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC15.87■□□□□ 0.13
NIPAL3Q6P499 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NIPAL3Q6P499 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
NIPAL3Q6P499 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NIPAL3Q6P499 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC15.87■□□□□ 0.13
NIPAL3Q6P499 UPK3BP1-201ENST00000428678 509 ntBASIC15.87■□□□□ 0.13
NIPAL3Q6P499 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC15.87■□□□□ 0.13
NIPAL3Q6P499 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC15.87■□□□□ 0.13
NIPAL3Q6P499 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC15.87■□□□□ 0.13
NIPAL3Q6P499 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.87■□□□□ 0.13
NIPAL3Q6P499 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC15.87■□□□□ 0.13
NIPAL3Q6P499 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms