Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PCDH1Q08174 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PCDH1Q08174 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.83■□□□□ 0.28
PCDH1Q08174 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PCDH1Q08174 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PCDH1Q08174 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PCDH1Q08174 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.83■□□□□ 0.28
PCDH1Q08174 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.83■□□□□ 0.28
PCDH1Q08174 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
PCDH1Q08174 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.83■□□□□ 0.28
PCDH1Q08174 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PCDH1Q08174 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.83■□□□□ 0.28
PCDH1Q08174 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.83■□□□□ 0.28
PCDH1Q08174 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.83■□□□□ 0.28
PCDH1Q08174 AC132938.5-201ENST00000624980 1813 ntBASIC16.83■□□□□ 0.28
PCDH1Q08174 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PCDH1Q08174 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PCDH1Q08174 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.82■□□□□ 0.28
PCDH1Q08174 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PCDH1Q08174 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH1Q08174 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH1Q08174 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.82■□□□□ 0.28
PCDH1Q08174 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.82■□□□□ 0.28
PCDH1Q08174 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
PCDH1Q08174 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH1Q08174 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH1Q08174 AL121761.2-201ENST00000598007 1648 ntBASIC16.82■□□□□ 0.28
PCDH1Q08174 PMPCAP1-201ENST00000508114 1576 ntBASIC16.82■□□□□ 0.28
PCDH1Q08174 AC009336.1-201ENST00000608941 1553 ntBASIC16.82■□□□□ 0.28
PCDH1Q08174 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH1Q08174 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PCDH1Q08174 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH1Q08174 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH1Q08174 RCN1P2-201ENST00000398357 915 ntBASIC16.82■□□□□ 0.28
PCDH1Q08174 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH1Q08174 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.82■□□□□ 0.28
PCDH1Q08174 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH1Q08174 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH1Q08174 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.82■□□□□ 0.28
PCDH1Q08174 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
PCDH1Q08174 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PCDH1Q08174 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
PCDH1Q08174 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.82■□□□□ 0.28
PCDH1Q08174 AP000867.4-201ENST00000641616 219 ntBASIC16.82■□□□□ 0.28
PCDH1Q08174 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH1Q08174 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH1Q08174 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
PCDH1Q08174 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH1Q08174 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.82■□□□□ 0.28
PCDH1Q08174 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.82■□□□□ 0.28
PCDH1Q08174 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
PCDH1Q08174 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH1Q08174 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH1Q08174 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH1Q08174 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH1Q08174 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH1Q08174 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH1Q08174 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH1Q08174 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
PCDH1Q08174 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH1Q08174 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH1Q08174 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
PCDH1Q08174 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
PCDH1Q08174 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
PCDH1Q08174 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH1Q08174 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH1Q08174 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
PCDH1Q08174 LINC00265-3P-201ENST00000447588 903 ntBASIC16.81■□□□□ 0.28
PCDH1Q08174 MINOS1P3-201ENST00000457048 203 ntBASIC16.81■□□□□ 0.28
PCDH1Q08174 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
PCDH1Q08174 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.81■□□□□ 0.28
PCDH1Q08174 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
PCDH1Q08174 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.81■□□□□ 0.28
PCDH1Q08174 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.81■□□□□ 0.28
PCDH1Q08174 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.81■□□□□ 0.28
PCDH1Q08174 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH1Q08174 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.81■□□□□ 0.28
PCDH1Q08174 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH1Q08174 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH1Q08174 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.81■□□□□ 0.28
PCDH1Q08174 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH1Q08174 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
PCDH1Q08174 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH1Q08174 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDH1Q08174 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
PCDH1Q08174 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.81■□□□□ 0.28
PCDH1Q08174 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH1Q08174 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH1Q08174 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH1Q08174 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
PCDH1Q08174 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH1Q08174 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.8■□□□□ 0.28
PCDH1Q08174 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.8■□□□□ 0.28
PCDH1Q08174 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
PCDH1Q08174 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH1Q08174 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH1Q08174 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
PCDH1Q08174 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH1Q08174 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDH1Q08174 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms