Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.11■□□□□ 0.33
SHMT2P34897 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
SHMT2P34897 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHMT2P34897 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
SHMT2P34897 RBM17P3-201ENST00000417687 1192 ntBASIC17.11■□□□□ 0.33
SHMT2P34897 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.11■□□□□ 0.33
SHMT2P34897 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.11■□□□□ 0.33
SHMT2P34897 ABCD1P5-201ENST00000445663 754 ntBASIC17.11■□□□□ 0.33
SHMT2P34897 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC17.11■□□□□ 0.33
SHMT2P34897 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17.11■□□□□ 0.33
SHMT2P34897 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.11■□□□□ 0.33
SHMT2P34897 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.11■□□□□ 0.33
SHMT2P34897 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHMT2P34897 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
SHMT2P34897 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SHMT2P34897 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.11■□□□□ 0.33
SHMT2P34897 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHMT2P34897 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHMT2P34897 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHMT2P34897 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHMT2P34897 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.11■□□□□ 0.33
SHMT2P34897 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.11■□□□□ 0.33
SHMT2P34897 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.11■□□□□ 0.33
SHMT2P34897 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHMT2P34897 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHMT2P34897 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.11■□□□□ 0.33
SHMT2P34897 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHMT2P34897 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHMT2P34897 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHMT2P34897 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHMT2P34897 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.1■□□□□ 0.33
SHMT2P34897 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.1■□□□□ 0.33
SHMT2P34897 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.1■□□□□ 0.33
SHMT2P34897 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHMT2P34897 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHMT2P34897 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHMT2P34897 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.1■□□□□ 0.33
SHMT2P34897 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHMT2P34897 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHMT2P34897 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.1■□□□□ 0.33
SHMT2P34897 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.1■□□□□ 0.33
SHMT2P34897 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.1■□□□□ 0.33
SHMT2P34897 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.1■□□□□ 0.33
SHMT2P34897 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHMT2P34897 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.1■□□□□ 0.33
SHMT2P34897 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.1■□□□□ 0.33
SHMT2P34897 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHMT2P34897 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.1■□□□□ 0.33
SHMT2P34897 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHMT2P34897 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHMT2P34897 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.1■□□□□ 0.33
SHMT2P34897 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHMT2P34897 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.1■□□□□ 0.33
SHMT2P34897 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
SHMT2P34897 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.1■□□□□ 0.33
SHMT2P34897 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.1■□□□□ 0.33
SHMT2P34897 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.1■□□□□ 0.33
SHMT2P34897 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHMT2P34897 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
SHMT2P34897 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
SHMT2P34897 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.09■□□□□ 0.33
SHMT2P34897 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHMT2P34897 AKR1C7P-201ENST00000305623 895 ntBASIC17.09■□□□□ 0.33
SHMT2P34897 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHMT2P34897 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHMT2P34897 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.09■□□□□ 0.33
SHMT2P34897 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHMT2P34897 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.09■□□□□ 0.33
SHMT2P34897 EMBP1-201ENST00000458200 901 ntBASIC17.09■□□□□ 0.33
SHMT2P34897 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC17.09■□□□□ 0.33
SHMT2P34897 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.09■□□□□ 0.33
SHMT2P34897 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.09■□□□□ 0.33
SHMT2P34897 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.09■□□□□ 0.33
SHMT2P34897 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.09■□□□□ 0.33
SHMT2P34897 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHMT2P34897 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.09■□□□□ 0.33
SHMT2P34897 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
SHMT2P34897 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.09■□□□□ 0.33
SHMT2P34897 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.09■□□□□ 0.33
SHMT2P34897 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SHMT2P34897 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SHMT2P34897 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHMT2P34897 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SHMT2P34897 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHMT2P34897 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.09■□□□□ 0.33
SHMT2P34897 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SHMT2P34897 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHMT2P34897 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SHMT2P34897 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.09■□□□□ 0.33
SHMT2P34897 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SHMT2P34897 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHMT2P34897 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
SHMT2P34897 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHMT2P34897 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHMT2P34897 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHMT2P34897 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHMT2P34897 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SHMT2P34897 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SHMT2P34897 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
SHMT2P34897 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms