Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LDLRP01130 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
LDLRP01130 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.89■□□□□ 0.29
LDLRP01130 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.89■□□□□ 0.29
LDLRP01130 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LDLRP01130 MIR149-201ENST00000384879 89 ntBASIC16.89■□□□□ 0.29
LDLRP01130 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LDLRP01130 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LDLRP01130 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
LDLRP01130 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.89■□□□□ 0.29
LDLRP01130 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC16.89■□□□□ 0.29
LDLRP01130 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LDLRP01130 AL163051.1-201ENST00000569214 1512 ntBASIC16.89■□□□□ 0.29
LDLRP01130 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.89■□□□□ 0.29
LDLRP01130 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.89■□□□□ 0.29
LDLRP01130 UROS-202ENST00000368778 1556 ntTSL 2 BASIC16.89■□□□□ 0.29
LDLRP01130 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
LDLRP01130 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LDLRP01130 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.89■□□□□ 0.29
LDLRP01130 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
LDLRP01130 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.89■□□□□ 0.29
LDLRP01130 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
LDLRP01130 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LDLRP01130 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDLRP01130 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDLRP01130 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDLRP01130 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LDLRP01130 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.88■□□□□ 0.29
LDLRP01130 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDLRP01130 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
LDLRP01130 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LDLRP01130 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDLRP01130 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDLRP01130 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDLRP01130 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDLRP01130 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDLRP01130 AC079781.3-201ENST00000449110 356 ntBASIC16.88■□□□□ 0.29
LDLRP01130 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.88■□□□□ 0.29
LDLRP01130 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.88■□□□□ 0.29
LDLRP01130 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
LDLRP01130 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.88■□□□□ 0.29
LDLRP01130 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDLRP01130 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.88■□□□□ 0.29
LDLRP01130 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDLRP01130 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDLRP01130 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC16.88■□□□□ 0.29
LDLRP01130 KRT18P1-202ENST00000452408 1331 ntBASIC16.88■□□□□ 0.29
LDLRP01130 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.88■□□□□ 0.29
LDLRP01130 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.88■□□□□ 0.29
LDLRP01130 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LDLRP01130 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDLRP01130 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LDLRP01130 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LDLRP01130 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC16.88■□□□□ 0.29
LDLRP01130 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC16.88■□□□□ 0.29
LDLRP01130 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LDLRP01130 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LDLRP01130 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
LDLRP01130 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.88■□□□□ 0.29
LDLRP01130 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.88■□□□□ 0.29
LDLRP01130 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC16.87■□□□□ 0.29
LDLRP01130 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LDLRP01130 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LDLRP01130 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.87■□□□□ 0.29
LDLRP01130 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LDLRP01130 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LDLRP01130 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LDLRP01130 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LDLRP01130 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LDLRP01130 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.87■□□□□ 0.29
LDLRP01130 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LDLRP01130 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LDLRP01130 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
LDLRP01130 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LDLRP01130 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
LDLRP01130 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC16.87■□□□□ 0.29
LDLRP01130 MCCD1P1-208ENST00000445732 328 ntBASIC16.87■□□□□ 0.29
LDLRP01130 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC16.87■□□□□ 0.29
LDLRP01130 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC16.87■□□□□ 0.29
LDLRP01130 AC106795.1-205ENST00000512851 1056 ntBASIC16.87■□□□□ 0.29
LDLRP01130 KRT8P26-201ENST00000534154 1276 ntBASIC16.87■□□□□ 0.29
LDLRP01130 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.87■□□□□ 0.29
LDLRP01130 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.87■□□□□ 0.29
LDLRP01130 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC16.87■□□□□ 0.29
LDLRP01130 MIR4674-201ENST00000582457 87 ntBASIC16.87■□□□□ 0.29
LDLRP01130 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.87■□□□□ 0.29
LDLRP01130 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.87■□□□□ 0.29
LDLRP01130 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LDLRP01130 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
LDLRP01130 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
LDLRP01130 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
LDLRP01130 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LDLRP01130 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LDLRP01130 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LDLRP01130 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LDLRP01130 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LDLRP01130 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
LDLRP01130 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.87■□□□□ 0.29
LDLRP01130 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC16.86■□□□□ 0.29
LDLRP01130 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms