Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS4BO75351 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS4BO75351 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS4BO75351 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.13■□□□□ 0.33
VPS4BO75351 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
VPS4BO75351 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS4BO75351 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS4BO75351 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS4BO75351 KRT8P47-201ENST00000604727 1398 ntBASIC17.13■□□□□ 0.33
VPS4BO75351 AC084018.2-201ENST00000613093 2607 ntBASIC17.13■□□□□ 0.33
VPS4BO75351 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
VPS4BO75351 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
VPS4BO75351 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS4BO75351 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS4BO75351 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS4BO75351 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS4BO75351 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS4BO75351 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS4BO75351 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS4BO75351 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS4BO75351 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS4BO75351 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS4BO75351 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
VPS4BO75351 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
VPS4BO75351 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS4BO75351 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
VPS4BO75351 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
VPS4BO75351 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
VPS4BO75351 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
VPS4BO75351 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
VPS4BO75351 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
VPS4BO75351 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS4BO75351 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.12■□□□□ 0.33
VPS4BO75351 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.12■□□□□ 0.33
VPS4BO75351 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
VPS4BO75351 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.12■□□□□ 0.33
VPS4BO75351 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS4BO75351 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
VPS4BO75351 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS4BO75351 KRT8P26-201ENST00000534154 1276 ntBASIC17.12■□□□□ 0.33
VPS4BO75351 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.12■□□□□ 0.33
VPS4BO75351 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.12■□□□□ 0.33
VPS4BO75351 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.12■□□□□ 0.33
VPS4BO75351 TBCB-205ENST00000585746 875 ntTSL 3 BASIC17.12■□□□□ 0.33
VPS4BO75351 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC17.12■□□□□ 0.33
VPS4BO75351 KRT18P1-202ENST00000452408 1331 ntBASIC17.12■□□□□ 0.33
VPS4BO75351 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS4BO75351 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS4BO75351 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS4BO75351 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
VPS4BO75351 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS4BO75351 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
VPS4BO75351 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS4BO75351 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
VPS4BO75351 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS4BO75351 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS4BO75351 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
VPS4BO75351 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4BO75351 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
VPS4BO75351 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4BO75351 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS4BO75351 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4BO75351 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4BO75351 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4BO75351 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4BO75351 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4BO75351 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS4BO75351 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS4BO75351 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4BO75351 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4BO75351 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
VPS4BO75351 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4BO75351 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS4BO75351 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4BO75351 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4BO75351 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4BO75351 AC005104.2-201ENST00000427818 678 ntBASIC17.11■□□□□ 0.33
VPS4BO75351 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.11■□□□□ 0.33
VPS4BO75351 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.11■□□□□ 0.33
VPS4BO75351 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
VPS4BO75351 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4BO75351 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.11■□□□□ 0.33
VPS4BO75351 AC009154.2-201ENST00000621177 724 ntBASIC17.11■□□□□ 0.33
VPS4BO75351 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
VPS4BO75351 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4BO75351 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.11■□□□□ 0.33
VPS4BO75351 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4BO75351 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4BO75351 AC124067.4-201ENST00000519691 2379 ntBASIC17.11■□□□□ 0.33
VPS4BO75351 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4BO75351 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4BO75351 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4BO75351 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4BO75351 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4BO75351 AC011676.5-201ENST00000624864 2660 ntBASIC17.11■□□□□ 0.33
VPS4BO75351 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4BO75351 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
VPS4BO75351 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.11■□□□□ 0.33
VPS4BO75351 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VPS4BO75351 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms