Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHOX2O60902 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
SHOX2O60902 TCAF2P1-201ENST00000291129 2421 ntBASIC17.47■□□□□ 0.39
SHOX2O60902 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SHOX2O60902 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHOX2O60902 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHOX2O60902 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
SHOX2O60902 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.47■□□□□ 0.39
SHOX2O60902 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SHOX2O60902 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
SHOX2O60902 AL355802.2-201ENST00000402069 882 ntBASIC17.47■□□□□ 0.39
SHOX2O60902 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SHOX2O60902 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.47■□□□□ 0.39
SHOX2O60902 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SHOX2O60902 UNC93B5-201ENST00000530315 699 ntBASIC17.47■□□□□ 0.39
SHOX2O60902 AC142086.2-201ENST00000569753 217 ntBASIC17.47■□□□□ 0.39
SHOX2O60902 AC233263.1-201ENST00000578059 224 ntBASIC17.47■□□□□ 0.39
SHOX2O60902 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHOX2O60902 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
SHOX2O60902 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHOX2O60902 KRT8P47-201ENST00000604727 1398 ntBASIC17.47■□□□□ 0.39
SHOX2O60902 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHOX2O60902 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHOX2O60902 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
SHOX2O60902 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHOX2O60902 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHOX2O60902 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
SHOX2O60902 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC17.47■□□□□ 0.39
SHOX2O60902 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SHOX2O60902 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC17.47■□□□□ 0.39
SHOX2O60902 AC013268.4-201ENST00000637413 2228 ntBASIC17.47■□□□□ 0.39
SHOX2O60902 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.47■□□□□ 0.39
SHOX2O60902 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHOX2O60902 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.47■□□□□ 0.39
SHOX2O60902 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.47■□□□□ 0.39
SHOX2O60902 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHOX2O60902 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHOX2O60902 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHOX2O60902 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC17.46■□□□□ 0.39
SHOX2O60902 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHOX2O60902 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHOX2O60902 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
SHOX2O60902 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.46■□□□□ 0.39
SHOX2O60902 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHOX2O60902 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHOX2O60902 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHOX2O60902 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHOX2O60902 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
SHOX2O60902 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC17.46■□□□□ 0.39
SHOX2O60902 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHOX2O60902 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
SHOX2O60902 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
SHOX2O60902 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHOX2O60902 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.46■□□□□ 0.39
SHOX2O60902 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHOX2O60902 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC17.46■□□□□ 0.39
SHOX2O60902 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
SHOX2O60902 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHOX2O60902 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHOX2O60902 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHOX2O60902 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.46■□□□□ 0.39
SHOX2O60902 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.46■□□□□ 0.39
SHOX2O60902 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.46■□□□□ 0.39
SHOX2O60902 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHOX2O60902 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHOX2O60902 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
SHOX2O60902 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHOX2O60902 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHOX2O60902 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.46■□□□□ 0.39
SHOX2O60902 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
SHOX2O60902 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.46■□□□□ 0.38
SHOX2O60902 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
SHOX2O60902 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.45■□□□□ 0.38
SHOX2O60902 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC17.45■□□□□ 0.38
SHOX2O60902 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC17.45■□□□□ 0.38
SHOX2O60902 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SHOX2O60902 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC17.45■□□□□ 0.38
SHOX2O60902 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC17.45■□□□□ 0.38
SHOX2O60902 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC17.45■□□□□ 0.38
SHOX2O60902 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SHOX2O60902 KRT18P23-201ENST00000435622 1283 ntBASIC17.45■□□□□ 0.38
SHOX2O60902 PPP1R14BP5-201ENST00000440334 435 ntBASIC17.45■□□□□ 0.38
SHOX2O60902 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.45■□□□□ 0.38
SHOX2O60902 KLF13-207ENST00000560473 489 ntTSL 3 BASIC17.45■□□□□ 0.38
SHOX2O60902 MIR3180-4-201ENST00000582223 153 ntBASIC17.45■□□□□ 0.38
SHOX2O60902 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC17.45■□□□□ 0.38
SHOX2O60902 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms