Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
PRKNO60260 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PRKNO60260 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PRKNO60260 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
PRKNO60260 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.25■□□□□ 0.19
PRKNO60260 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.24■□□□□ 0.19
PRKNO60260 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PRKNO60260 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PRKNO60260 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PRKNO60260 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
PRKNO60260 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PRKNO60260 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PRKNO60260 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.24■□□□□ 0.19
PRKNO60260 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
PRKNO60260 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PRKNO60260 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PRKNO60260 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PRKNO60260 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC16.24■□□□□ 0.19
PRKNO60260 AL139288.1-201ENST00000623748 933 ntBASIC16.24■□□□□ 0.19
PRKNO60260 AC073592.4-201ENST00000623827 446 ntBASIC16.24■□□□□ 0.19
PRKNO60260 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.24■□□□□ 0.19
PRKNO60260 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.24■□□□□ 0.19
PRKNO60260 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PRKNO60260 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PRKNO60260 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.24■□□□□ 0.19
PRKNO60260 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PRKNO60260 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.24■□□□□ 0.19
PRKNO60260 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PRKNO60260 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.23■□□□□ 0.19
PRKNO60260 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
PRKNO60260 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC16.23■□□□□ 0.19
PRKNO60260 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
PRKNO60260 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PRKNO60260 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.23■□□□□ 0.19
PRKNO60260 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
PRKNO60260 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PRKNO60260 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PRKNO60260 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PRKNO60260 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PRKNO60260 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
PRKNO60260 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.23■□□□□ 0.19
PRKNO60260 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.23■□□□□ 0.19
PRKNO60260 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
PRKNO60260 RPS2P1-201ENST00000434010 821 ntBASIC16.23■□□□□ 0.19
PRKNO60260 AF186996.4-201ENST00000467186 377 ntBASIC16.23■□□□□ 0.19
PRKNO60260 AC002558.1-201ENST00000488906 803 ntBASIC16.23■□□□□ 0.19
PRKNO60260 AC073648.2-201ENST00000510116 352 ntBASIC16.23■□□□□ 0.19
PRKNO60260 AC079776.4-201ENST00000511039 504 ntBASIC16.23■□□□□ 0.19
PRKNO60260 AL662844.1-201ENST00000546340 181 ntBASIC16.23■□□□□ 0.19
PRKNO60260 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
PRKNO60260 STK25P1-201ENST00000585406 838 ntBASIC16.23■□□□□ 0.19
PRKNO60260 MTDHP4-201ENST00000600287 670 ntBASIC16.23■□□□□ 0.19
PRKNO60260 AL773604.1-201ENST00000617417 272 ntBASIC16.23■□□□□ 0.19
PRKNO60260 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.23■□□□□ 0.19
PRKNO60260 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.23■□□□□ 0.19
PRKNO60260 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
PRKNO60260 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
PRKNO60260 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PRKNO60260 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
PRKNO60260 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PRKNO60260 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PRKNO60260 LYSMD4-203ENST00000378904 2122 ntBASIC16.22■□□□□ 0.19
PRKNO60260 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
PRKNO60260 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
PRKNO60260 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.22■□□□□ 0.19
PRKNO60260 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
PRKNO60260 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PRKNO60260 SIGLEC16-201ENST00000599858 1437 ntBASIC16.22■□□□□ 0.19
PRKNO60260 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PRKNO60260 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PRKNO60260 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.22■□□□□ 0.19
PRKNO60260 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
PRKNO60260 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PRKNO60260 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.22■□□□□ 0.19
PRKNO60260 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
PRKNO60260 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
PRKNO60260 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PRKNO60260 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.22■□□□□ 0.19
PRKNO60260 KLF4P1-201ENST00000412782 1185 ntBASIC16.22■□□□□ 0.19
PRKNO60260 AL031284.1-201ENST00000419297 478 ntBASIC16.22■□□□□ 0.19
PRKNO60260 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PRKNO60260 IGHV3-52-201ENST00000519770 353 ntBASIC16.22■□□□□ 0.19
PRKNO60260 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.22■□□□□ 0.19
PRKNO60260 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.22■□□□□ 0.19
PRKNO60260 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC16.22■□□□□ 0.19
PRKNO60260 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.22■□□□□ 0.19
PRKNO60260 MIR7706-201ENST00000613747 67 ntBASIC16.22■□□□□ 0.19
PRKNO60260 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
PRKNO60260 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PRKNO60260 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PRKNO60260 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.22■□□□□ 0.19
PRKNO60260 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PRKNO60260 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PRKNO60260 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
PRKNO60260 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PRKNO60260 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.22■□□□□ 0.19
PRKNO60260 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PRKNO60260 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PRKNO60260 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
PRKNO60260 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms