Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC15.11■□□□□ 0.01
COL12A1Q99715 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL12A1Q99715 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL12A1Q99715 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
COL12A1Q99715 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL12A1Q99715 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL12A1Q99715 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL12A1Q99715 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
COL12A1Q99715 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL12A1Q99715 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL12A1Q99715 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL12A1Q99715 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC15.1■□□□□ 0.01
COL12A1Q99715 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL12A1Q99715 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL12A1Q99715 FALEC-201ENST00000416894 566 ntTSL 3 BASIC15.1■□□□□ 0.01
COL12A1Q99715 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
COL12A1Q99715 AC140912.1-201ENST00000577171 1054 ntBASIC15.1■□□□□ 0.01
COL12A1Q99715 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC15.1■□□□□ 0.01
COL12A1Q99715 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL12A1Q99715 PFAS-212ENST00000625942 396 ntTSL 5 BASIC15.1■□□□□ 0.01
COL12A1Q99715 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC15.1■□□□□ 0.01
COL12A1Q99715 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
COL12A1Q99715 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL12A1Q99715 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
COL12A1Q99715 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL12A1Q99715 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL12A1Q99715 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.1■□□□□ 0.01
COL12A1Q99715 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL12A1Q99715 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
COL12A1Q99715 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC15.1■□□□□ 0.01
COL12A1Q99715 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL12A1Q99715 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL12A1Q99715 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
COL12A1Q99715 AC241585.1-201ENST00000433527 519 ntBASIC15.1■□□□□ 0.01
COL12A1Q99715 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC15.1■□□□□ 0.01
COL12A1Q99715 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.1■□□□□ 0.01
COL12A1Q99715 AL583810.1-201ENST00000553344 1045 ntBASIC15.1■□□□□ 0.01
COL12A1Q99715 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
COL12A1Q99715 AC104794.3-201ENST00000566840 1248 ntBASIC15.1■□□□□ 0.01
COL12A1Q99715 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC15.1■□□□□ 0.01
COL12A1Q99715 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL12A1Q99715 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
COL12A1Q99715 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC15.1■□□□□ 0.01
COL12A1Q99715 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL12A1Q99715 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL12A1Q99715 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL12A1Q99715 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC15.1■□□□□ 0.01
COL12A1Q99715 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL12A1Q99715 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL12A1Q99715 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
COL12A1Q99715 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
COL12A1Q99715 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC15.09■□□□□ 0.01
COL12A1Q99715 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
COL12A1Q99715 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL12A1Q99715 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL12A1Q99715 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL12A1Q99715 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC15.09■□□□□ 0.01
COL12A1Q99715 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC15.09■□□□□ 0.01
COL12A1Q99715 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC15.09■□□□□ 0.01
COL12A1Q99715 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL12A1Q99715 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL12A1Q99715 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL12A1Q99715 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC15.09■□□□□ 0.01
COL12A1Q99715 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC15.09■□□□□ 0.01
COL12A1Q99715 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC15.09■□□□□ 0.01
COL12A1Q99715 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC15.09■□□□□ 0.01
COL12A1Q99715 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL12A1Q99715 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL12A1Q99715 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
COL12A1Q99715 ANKRD19P-201ENST00000338192 862 ntBASIC15.08■□□□□ 0.01
COL12A1Q99715 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
COL12A1Q99715 AC103564.2-201ENST00000432853 1299 ntBASIC15.08■□□□□ 0.01
COL12A1Q99715 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC15.08■□□□□ 0.01
COL12A1Q99715 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.08■□□□□ 0.01
COL12A1Q99715 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.08■□□□□ 0.01
COL12A1Q99715 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC15.08■□□□□ 0.01
COL12A1Q99715 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC15.08■□□□□ 0.01
COL12A1Q99715 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
COL12A1Q99715 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC15.08■□□□□ 0.01
COL12A1Q99715 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
COL12A1Q99715 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL12A1Q99715 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL12A1Q99715 AC073130.3-201ENST00000624389 2278 ntBASIC15.08■□□□□ 0
COL12A1Q99715 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL12A1Q99715 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC15.08■□□□□ 0
COL12A1Q99715 REEP4-207ENST00000523293 913 ntTSL 3 BASIC15.08■□□□□ 0
COL12A1Q99715 APOC4-201ENST00000591600 348 ntTSL 3 BASIC15.08■□□□□ 0
COL12A1Q99715 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.08■□□□□ 0
COL12A1Q99715 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL12A1Q99715 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL12A1Q99715 AC020907.1-201ENST00000616460 1350 ntBASIC15.08■□□□□ 0
COL12A1Q99715 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL12A1Q99715 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
COL12A1Q99715 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL12A1Q99715 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL12A1Q99715 PODN-203ENST00000395871 2744 ntTSL 5 BASIC15.08■□□□□ 0
COL12A1Q99715 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL12A1Q99715 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
COL12A1Q99715 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL12A1Q99715 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms