Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
NUP88Q99567 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NUP88Q99567 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NUP88Q99567 AC067852.2-201ENST00000590513 2313 ntBASIC20.43■□□□□ 0.86
NUP88Q99567 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
NUP88Q99567 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
NUP88Q99567 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NUP88Q99567 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC20.43■□□□□ 0.86
NUP88Q99567 LBH-204ENST00000406087 559 ntTSL 4 BASIC20.43■□□□□ 0.86
NUP88Q99567 AL020989.1-201ENST00000422979 469 ntBASIC20.43■□□□□ 0.86
NUP88Q99567 KRT18P27-201ENST00000427733 1299 ntBASIC20.43■□□□□ 0.86
NUP88Q99567 RPP21-221ENST00000428040 594 ntTSL 2 BASIC20.43■□□□□ 0.86
NUP88Q99567 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC20.43■□□□□ 0.86
NUP88Q99567 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NUP88Q99567 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC20.43■□□□□ 0.86
NUP88Q99567 PRYP5-201ENST00000451909 266 ntBASIC20.43■□□□□ 0.86
NUP88Q99567 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
NUP88Q99567 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC20.43■□□□□ 0.86
NUP88Q99567 AL356488.2-201ENST00000602755 427 ntBASIC20.43■□□□□ 0.86
NUP88Q99567 GPALPP1-207ENST00000611650 899 ntBASIC20.43■□□□□ 0.86
NUP88Q99567 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC20.43■□□□□ 0.86
NUP88Q99567 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NUP88Q99567 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC20.43■□□□□ 0.86
NUP88Q99567 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC20.43■□□□□ 0.86
NUP88Q99567 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NUP88Q99567 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC20.43■□□□□ 0.86
NUP88Q99567 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NUP88Q99567 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NUP88Q99567 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC20.43■□□□□ 0.86
NUP88Q99567 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC20.42■□□□□ 0.86
NUP88Q99567 LTB4R2-202ENST00000528054 3092 ntBASIC20.42■□□□□ 0.86
NUP88Q99567 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC20.42■□□□□ 0.86
NUP88Q99567 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NUP88Q99567 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC20.42■□□□□ 0.86
NUP88Q99567 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
NUP88Q99567 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC20.42■□□□□ 0.86
NUP88Q99567 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NUP88Q99567 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
NUP88Q99567 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC20.42■□□□□ 0.86
NUP88Q99567 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NUP88Q99567 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NUP88Q99567 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
NUP88Q99567 AC073621.1-201ENST00000392730 636 ntBASIC20.42■□□□□ 0.86
NUP88Q99567 DDX43P3-201ENST00000441064 443 ntBASIC20.42■□□□□ 0.86
NUP88Q99567 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
NUP88Q99567 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC20.42■□□□□ 0.86
NUP88Q99567 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NUP88Q99567 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC20.42■□□□□ 0.86
NUP88Q99567 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC20.42■□□□□ 0.86
NUP88Q99567 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NUP88Q99567 PMS2P7-201ENST00000506558 1336 ntBASIC20.42■□□□□ 0.86
NUP88Q99567 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NUP88Q99567 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NUP88Q99567 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NUP88Q99567 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
NUP88Q99567 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NUP88Q99567 BX276092.7-203ENST00000637198 1536 ntBASIC20.42■□□□□ 0.86
NUP88Q99567 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC20.42■□□□□ 0.86
NUP88Q99567 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NUP88Q99567 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
NUP88Q99567 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
NUP88Q99567 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NUP88Q99567 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
NUP88Q99567 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NUP88Q99567 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
NUP88Q99567 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC20.41■□□□□ 0.86
NUP88Q99567 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NUP88Q99567 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC20.41■□□□□ 0.86
NUP88Q99567 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NUP88Q99567 MED15P5-201ENST00000423150 992 ntBASIC20.41■□□□□ 0.86
NUP88Q99567 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC20.41■□□□□ 0.86
NUP88Q99567 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC20.41■□□□□ 0.86
NUP88Q99567 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
NUP88Q99567 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC20.41■□□□□ 0.86
NUP88Q99567 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
NUP88Q99567 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NUP88Q99567 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.41■□□□□ 0.86
NUP88Q99567 FLJ13224-201ENST00000313737 1514 ntBASIC20.41■□□□□ 0.86
NUP88Q99567 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NUP88Q99567 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
NUP88Q99567 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
NUP88Q99567 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NUP88Q99567 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC20.41■□□□□ 0.86
NUP88Q99567 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
NUP88Q99567 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NUP88Q99567 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NUP88Q99567 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
NUP88Q99567 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NUP88Q99567 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC20.4■□□□□ 0.86
NUP88Q99567 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NUP88Q99567 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC20.4■□□□□ 0.86
NUP88Q99567 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
NUP88Q99567 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC20.4■□□□□ 0.86
NUP88Q99567 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
NUP88Q99567 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC20.4■□□□□ 0.86
NUP88Q99567 AC007967.2-201ENST00000432613 625 ntBASIC20.4■□□□□ 0.86
NUP88Q99567 AC009947.1-201ENST00000444350 727 ntBASIC20.4■□□□□ 0.86
NUP88Q99567 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC20.4■□□□□ 0.86
NUP88Q99567 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
NUP88Q99567 PGAM5P1-201ENST00000518923 814 ntBASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms