Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
USP28Q96RU2 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
USP28Q96RU2 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC19.96■□□□□ 0.79
USP28Q96RU2 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC19.96■□□□□ 0.79
USP28Q96RU2 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP28Q96RU2 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC19.96■□□□□ 0.79
USP28Q96RU2 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP28Q96RU2 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
USP28Q96RU2 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC19.96■□□□□ 0.79
USP28Q96RU2 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP28Q96RU2 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
USP28Q96RU2 FXN-203ENST00000396366 922 ntTSL 2 BASIC19.96■□□□□ 0.79
USP28Q96RU2 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC19.96■□□□□ 0.79
USP28Q96RU2 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC19.96■□□□□ 0.79
USP28Q96RU2 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC19.96■□□□□ 0.79
USP28Q96RU2 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC19.96■□□□□ 0.79
USP28Q96RU2 PTK2-216ENST00000519881 863 ntTSL 3 BASIC19.96■□□□□ 0.79
USP28Q96RU2 AC011840.4-201ENST00000578471 627 ntBASIC19.96■□□□□ 0.79
USP28Q96RU2 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC19.96■□□□□ 0.79
USP28Q96RU2 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC19.96■□□□□ 0.79
USP28Q96RU2 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
USP28Q96RU2 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC19.96■□□□□ 0.79
USP28Q96RU2 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
USP28Q96RU2 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP28Q96RU2 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
USP28Q96RU2 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC19.96■□□□□ 0.79
USP28Q96RU2 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.96■□□□□ 0.79
USP28Q96RU2 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC19.96■□□□□ 0.79
USP28Q96RU2 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19.95■□□□□ 0.79
USP28Q96RU2 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC19.95■□□□□ 0.78
USP28Q96RU2 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
USP28Q96RU2 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC19.95■□□□□ 0.78
USP28Q96RU2 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC19.95■□□□□ 0.78
USP28Q96RU2 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 FLJ38576-201ENST00000623820 2459 ntBASIC19.95■□□□□ 0.78
USP28Q96RU2 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC19.95■□□□□ 0.78
USP28Q96RU2 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC19.95■□□□□ 0.78
USP28Q96RU2 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 CD320-202ENST00000537716 1119 ntTSL 2 BASIC19.95■□□□□ 0.78
USP28Q96RU2 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC19.95■□□□□ 0.78
USP28Q96RU2 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC19.95■□□□□ 0.78
USP28Q96RU2 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC19.95■□□□□ 0.78
USP28Q96RU2 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 AC005332.1-201ENST00000577698 1310 ntBASIC19.95■□□□□ 0.78
USP28Q96RU2 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP28Q96RU2 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC19.95■□□□□ 0.78
USP28Q96RU2 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC19.94■□□□□ 0.78
USP28Q96RU2 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC19.94■□□□□ 0.78
USP28Q96RU2 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USP28Q96RU2 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP28Q96RU2 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP28Q96RU2 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC19.94■□□□□ 0.78
USP28Q96RU2 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP28Q96RU2 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC19.94■□□□□ 0.78
USP28Q96RU2 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC19.94■□□□□ 0.78
USP28Q96RU2 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC19.94■□□□□ 0.78
USP28Q96RU2 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USP28Q96RU2 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP28Q96RU2 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP28Q96RU2 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP28Q96RU2 BET1L-202ENST00000332865 533 ntTSL 5 BASIC19.94■□□□□ 0.78
USP28Q96RU2 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC19.94■□□□□ 0.78
USP28Q96RU2 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.94■□□□□ 0.78
USP28Q96RU2 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
USP28Q96RU2 STK25P1-201ENST00000585406 838 ntBASIC19.94■□□□□ 0.78
USP28Q96RU2 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USP28Q96RU2 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC19.94■□□□□ 0.78
USP28Q96RU2 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC19.94■□□□□ 0.78
USP28Q96RU2 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
USP28Q96RU2 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC19.94■□□□□ 0.78
USP28Q96RU2 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USP28Q96RU2 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC19.94■□□□□ 0.78
USP28Q96RU2 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP28Q96RU2 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC19.94■□□□□ 0.78
USP28Q96RU2 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP28Q96RU2 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms