Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 STK25P1-201ENST00000585406 838 ntBASIC17.08■□□□□ 0.33
VPS13AQ96RL7 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
VPS13AQ96RL7 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.08■□□□□ 0.33
VPS13AQ96RL7 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.33
VPS13AQ96RL7 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.08■□□□□ 0.33
VPS13AQ96RL7 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
VPS13AQ96RL7 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
VPS13AQ96RL7 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
VPS13AQ96RL7 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
VPS13AQ96RL7 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.08■□□□□ 0.33
VPS13AQ96RL7 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
VPS13AQ96RL7 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS13AQ96RL7 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS13AQ96RL7 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
VPS13AQ96RL7 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VPS13AQ96RL7 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.08■□□□□ 0.32
VPS13AQ96RL7 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS13AQ96RL7 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS13AQ96RL7 AC103564.2-201ENST00000432853 1299 ntBASIC17.08■□□□□ 0.32
VPS13AQ96RL7 MIR4538-201ENST00000581377 78 ntBASIC17.08■□□□□ 0.32
VPS13AQ96RL7 AC099568.2-201ENST00000609194 695 ntBASIC17.08■□□□□ 0.32
VPS13AQ96RL7 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
VPS13AQ96RL7 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.08■□□□□ 0.32
VPS13AQ96RL7 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VPS13AQ96RL7 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
VPS13AQ96RL7 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS13AQ96RL7 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS13AQ96RL7 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS13AQ96RL7 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.08■□□□□ 0.32
VPS13AQ96RL7 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS13AQ96RL7 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS13AQ96RL7 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC17.08■□□□□ 0.32
VPS13AQ96RL7 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
VPS13AQ96RL7 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.08■□□□□ 0.32
VPS13AQ96RL7 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS13AQ96RL7 LINC00982-205ENST00000420957 435 ntBASIC17.08■□□□□ 0.32
VPS13AQ96RL7 AL671277.1-201ENST00000429656 993 ntBASIC17.08■□□□□ 0.32
VPS13AQ96RL7 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC17.08■□□□□ 0.32
VPS13AQ96RL7 MIR4453-201ENST00000584019 89 ntBASIC17.08■□□□□ 0.32
VPS13AQ96RL7 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 ANO7L1-203ENST00000602586 1720 ntBASIC17.07■□□□□ 0.32
VPS13AQ96RL7 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 AC009477.1-201ENST00000452936 217 ntBASIC17.07■□□□□ 0.32
VPS13AQ96RL7 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 IGHV3OR16-16-201ENST00000563644 343 ntBASIC17.07■□□□□ 0.32
VPS13AQ96RL7 TP53TG3HP-202ENST00000569755 579 ntBASIC17.07■□□□□ 0.32
VPS13AQ96RL7 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 AP000997.3-201ENST00000623333 2250 ntBASIC17.07■□□□□ 0.32
VPS13AQ96RL7 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS13AQ96RL7 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 AC004233.3-201ENST00000607794 1269 ntBASIC17.06■□□□□ 0.32
VPS13AQ96RL7 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 AKAP8P1-201ENST00000434743 1349 ntBASIC17.06■□□□□ 0.32
VPS13AQ96RL7 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS13AQ96RL7 AL590787.1-201ENST00000568856 1315 ntBASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms