Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 DNAJB3-202ENST00000449667 1266 ntBASIC16.97■□□□□ 0.31
LMX1AQ8TE12 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 AL596442.2-201ENST00000610240 980 ntBASIC16.97■□□□□ 0.31
LMX1AQ8TE12 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
LMX1AQ8TE12 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
LMX1AQ8TE12 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
LMX1AQ8TE12 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LMX1AQ8TE12 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LMX1AQ8TE12 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LMX1AQ8TE12 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.96■□□□□ 0.31
LMX1AQ8TE12 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
LMX1AQ8TE12 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LMX1AQ8TE12 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LMX1AQ8TE12 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
LMX1AQ8TE12 IGLL3P-201ENST00000412472 434 ntBASIC16.96■□□□□ 0.31
LMX1AQ8TE12 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.96■□□□□ 0.31
LMX1AQ8TE12 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.96■□□□□ 0.31
LMX1AQ8TE12 ALG1L5P-201ENST00000482043 771 ntBASIC16.96■□□□□ 0.31
LMX1AQ8TE12 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.96■□□□□ 0.31
LMX1AQ8TE12 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LMX1AQ8TE12 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.96■□□□□ 0.31
LMX1AQ8TE12 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.96■□□□□ 0.31
LMX1AQ8TE12 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
LMX1AQ8TE12 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
LMX1AQ8TE12 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LMX1AQ8TE12 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LMX1AQ8TE12 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
LMX1AQ8TE12 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
LMX1AQ8TE12 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
LMX1AQ8TE12 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
LMX1AQ8TE12 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
LMX1AQ8TE12 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
LMX1AQ8TE12 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 GGCT-205ENST00000409436 954 ntTSL 3 BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 AC004877.2-201ENST00000623941 599 ntBASIC16.95■□□□□ 0.3
LMX1AQ8TE12 AC010507.1-201ENST00000633895 436 ntBASIC16.95■□□□□ 0.3
LMX1AQ8TE12 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 AC046185.3-201ENST00000623228 1824 ntBASIC16.95■□□□□ 0.3
LMX1AQ8TE12 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 BCAR1-209ENST00000546196 1340 ntBASIC16.95■□□□□ 0.3
LMX1AQ8TE12 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.95■□□□□ 0.3
LMX1AQ8TE12 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1AQ8TE12 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms