Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 AL121772.3-201ENST00000610840 674 ntBASIC20.58■□□□□ 0.89
SYNE3Q6ZMZ3 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
SYNE3Q6ZMZ3 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC20.58■□□□□ 0.88
SYNE3Q6ZMZ3 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC20.58■□□□□ 0.88
SYNE3Q6ZMZ3 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC20.58■□□□□ 0.88
SYNE3Q6ZMZ3 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SYNE3Q6ZMZ3 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SYNE3Q6ZMZ3 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SYNE3Q6ZMZ3 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SYNE3Q6ZMZ3 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SYNE3Q6ZMZ3 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SYNE3Q6ZMZ3 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC20.58■□□□□ 0.88
SYNE3Q6ZMZ3 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
SYNE3Q6ZMZ3 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SYNE3Q6ZMZ3 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
SYNE3Q6ZMZ3 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SYNE3Q6ZMZ3 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SYNE3Q6ZMZ3 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 FUOM-202ENST00000368551 628 ntTSL 3 BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 KRT18P56-201ENST00000507275 550 ntBASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 COX5A-202ENST00000562233 441 ntTSL 3 BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 AL049757.1-201ENST00000616842 1596 ntBASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 AL138688.1-201ENST00000624851 1594 ntBASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE3Q6ZMZ3 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 KRT8P10-201ENST00000450021 1447 ntBASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 SRP19-202ENST00000445150 833 ntTSL 2 BASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
SYNE3Q6ZMZ3 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC20.55■□□□□ 0.88
SYNE3Q6ZMZ3 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
SYNE3Q6ZMZ3 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
SYNE3Q6ZMZ3 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SYNE3Q6ZMZ3 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SYNE3Q6ZMZ3 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC20.55■□□□□ 0.88
SYNE3Q6ZMZ3 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SYNE3Q6ZMZ3 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
SYNE3Q6ZMZ3 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SYNE3Q6ZMZ3 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SYNE3Q6ZMZ3 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNE3Q6ZMZ3 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNE3Q6ZMZ3 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNE3Q6ZMZ3 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNE3Q6ZMZ3 NKTR-203ENST00000442970 646 ntTSL 2 BASIC20.55■□□□□ 0.88
SYNE3Q6ZMZ3 AL139327.4-201ENST00000612362 153 ntBASIC20.55■□□□□ 0.88
SYNE3Q6ZMZ3 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNE3Q6ZMZ3 CEP83-AS1-201ENST00000623122 2482 ntBASIC20.55■□□□□ 0.88
SYNE3Q6ZMZ3 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC20.55■□□□□ 0.88
SYNE3Q6ZMZ3 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SYNE3Q6ZMZ3 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC20.55■□□□□ 0.88
SYNE3Q6ZMZ3 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms