Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC23.96■■□□□ 1.43
MSH6P52701 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
MSH6P52701 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
MSH6P52701 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC23.95■■□□□ 1.42
MSH6P52701 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
MSH6P52701 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC23.95■■□□□ 1.42
MSH6P52701 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.42
MSH6P52701 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC23.95■■□□□ 1.42
MSH6P52701 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
MSH6P52701 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC23.95■■□□□ 1.42
MSH6P52701 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC23.95■■□□□ 1.42
MSH6P52701 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.42
MSH6P52701 IFT20-216ENST00000588477 774 ntTSL 5 BASIC23.95■■□□□ 1.42
MSH6P52701 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
MSH6P52701 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
MSH6P52701 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
MSH6P52701 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC23.95■■□□□ 1.42
MSH6P52701 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
MSH6P52701 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC23.94■■□□□ 1.42
MSH6P52701 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC23.94■■□□□ 1.42
MSH6P52701 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC23.94■■□□□ 1.42
MSH6P52701 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
MSH6P52701 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSH6P52701 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC23.94■■□□□ 1.42
MSH6P52701 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC23.94■■□□□ 1.42
MSH6P52701 AC245100.3-201ENST00000441281 285 ntBASIC23.94■■□□□ 1.42
MSH6P52701 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC23.94■■□□□ 1.42
MSH6P52701 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC23.94■■□□□ 1.42
MSH6P52701 ALG1L8P-201ENST00000533887 760 ntBASIC23.94■■□□□ 1.42
MSH6P52701 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC23.94■■□□□ 1.42
MSH6P52701 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSH6P52701 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
MSH6P52701 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSH6P52701 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
MSH6P52701 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSH6P52701 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
MSH6P52701 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSH6P52701 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSH6P52701 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSH6P52701 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSH6P52701 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSH6P52701 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSH6P52701 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSH6P52701 AC100757.3-201ENST00000622361 1406 ntBASIC23.94■■□□□ 1.42
MSH6P52701 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSH6P52701 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
MSH6P52701 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC23.93■■□□□ 1.42
MSH6P52701 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
MSH6P52701 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC23.93■■□□□ 1.42
MSH6P52701 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
MSH6P52701 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
MSH6P52701 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC23.93■■□□□ 1.42
MSH6P52701 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
MSH6P52701 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
MSH6P52701 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC23.93■■□□□ 1.42
MSH6P52701 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
MSH6P52701 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
MSH6P52701 EFTUD1P1-204ENST00000560401 1798 ntBASIC23.93■■□□□ 1.42
MSH6P52701 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH6P52701 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC23.92■■□□□ 1.42
MSH6P52701 AC009949.1-201ENST00000623048 1830 ntBASIC23.92■■□□□ 1.42
MSH6P52701 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
MSH6P52701 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC23.92■■□□□ 1.42
MSH6P52701 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC23.92■■□□□ 1.42
MSH6P52701 CD81-202ENST00000381036 880 ntTSL 3 BASIC23.92■■□□□ 1.42
MSH6P52701 TSSK5P-201ENST00000423978 907 ntBASIC23.92■■□□□ 1.42
MSH6P52701 SPTLC1P1-201ENST00000447199 261 ntBASIC23.92■■□□□ 1.42
MSH6P52701 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC23.92■■□□□ 1.42
MSH6P52701 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC23.92■■□□□ 1.42
MSH6P52701 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC23.92■■□□□ 1.42
MSH6P52701 HILS1-202ENST00000545329 423 ntBASIC23.92■■□□□ 1.42
MSH6P52701 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC23.92■■□□□ 1.42
MSH6P52701 MIR4515-201ENST00000584082 81 ntBASIC23.92■■□□□ 1.42
MSH6P52701 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH6P52701 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH6P52701 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH6P52701 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH6P52701 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH6P52701 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC23.92■■□□□ 1.42
MSH6P52701 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC23.92■■□□□ 1.42
MSH6P52701 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC23.92■■□□□ 1.42
MSH6P52701 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC23.92■■□□□ 1.42
MSH6P52701 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH6P52701 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH6P52701 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
MSH6P52701 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH6P52701 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH6P52701 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH6P52701 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
MSH6P52701 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
MSH6P52701 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
MSH6P52701 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC23.91■■□□□ 1.42
MSH6P52701 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC23.91■■□□□ 1.42
MSH6P52701 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC23.91■■□□□ 1.42
MSH6P52701 AC010336.2-201ENST00000564226 506 ntBASIC23.91■■□□□ 1.42
MSH6P52701 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC23.91■■□□□ 1.42
MSH6P52701 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC23.91■■□□□ 1.42
MSH6P52701 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
MSH6P52701 AC073592.8-201ENST00000624126 511 ntBASIC23.91■■□□□ 1.42
MSH6P52701 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC23.91■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms