Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTPN9P43378 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTPN9P43378 DFFB-203ENST00000341385 572 ntTSL 5 BASIC18.13■□□□□ 0.49
PTPN9P43378 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.13■□□□□ 0.49
PTPN9P43378 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC18.13■□□□□ 0.49
PTPN9P43378 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTPN9P43378 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC18.13■□□□□ 0.49
PTPN9P43378 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC18.13■□□□□ 0.49
PTPN9P43378 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTPN9P43378 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTPN9P43378 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PTPN9P43378 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PTPN9P43378 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTPN9P43378 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
PTPN9P43378 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTPN9P43378 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC18.13■□□□□ 0.49
PTPN9P43378 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTPN9P43378 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTPN9P43378 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTPN9P43378 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
PTPN9P43378 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
PTPN9P43378 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTPN9P43378 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.12■□□□□ 0.49
PTPN9P43378 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 AC090340.1-201ENST00000620778 4980 ntBASIC18.12■□□□□ 0.49
PTPN9P43378 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
PTPN9P43378 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.12■□□□□ 0.49
PTPN9P43378 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
PTPN9P43378 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.12■□□□□ 0.49
PTPN9P43378 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.12■□□□□ 0.49
PTPN9P43378 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC18.12■□□□□ 0.49
PTPN9P43378 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.12■□□□□ 0.49
PTPN9P43378 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
PTPN9P43378 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
PTPN9P43378 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.12■□□□□ 0.49
PTPN9P43378 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC18.12■□□□□ 0.49
PTPN9P43378 AL355877.3-201ENST00000622820 899 ntBASIC18.12■□□□□ 0.49
PTPN9P43378 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
PTPN9P43378 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC18.12■□□□□ 0.49
PTPN9P43378 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.12■□□□□ 0.49
PTPN9P43378 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC18.12■□□□□ 0.49
PTPN9P43378 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
PTPN9P43378 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
PTPN9P43378 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PTPN9P43378 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
PTPN9P43378 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
PTPN9P43378 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC18.11■□□□□ 0.49
PTPN9P43378 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
PTPN9P43378 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 AKR1C7P-201ENST00000305623 895 ntBASIC18.11■□□□□ 0.49
PTPN9P43378 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 IPPK-202ENST00000375522 882 ntTSL 3 BASIC18.11■□□□□ 0.49
PTPN9P43378 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 PRYP5-201ENST00000451909 266 ntBASIC18.11■□□□□ 0.49
PTPN9P43378 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.11■□□□□ 0.49
PTPN9P43378 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC18.11■□□□□ 0.49
PTPN9P43378 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.11■□□□□ 0.49
PTPN9P43378 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.11■□□□□ 0.49
PTPN9P43378 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.11■□□□□ 0.49
PTPN9P43378 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC18.11■□□□□ 0.49
PTPN9P43378 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.11■□□□□ 0.49
PTPN9P43378 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.11■□□□□ 0.49
PTPN9P43378 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms