Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SCN4AP35499 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC20.39■□□□□ 0.85
SCN4AP35499 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
SCN4AP35499 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC20.39■□□□□ 0.85
SCN4AP35499 AC132938.2-201ENST00000579188 680 ntBASIC20.39■□□□□ 0.85
SCN4AP35499 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.85
SCN4AP35499 GPER1-207ENST00000619052 571 ntTSL 2 BASIC20.39■□□□□ 0.85
SCN4AP35499 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC20.39■□□□□ 0.85
SCN4AP35499 AL591163.1-201ENST00000641757 987 ntBASIC20.39■□□□□ 0.85
SCN4AP35499 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.39■□□□□ 0.85
SCN4AP35499 PCDHAC2-203ENST00000615316 3011 ntBASIC20.39■□□□□ 0.85
SCN4AP35499 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
SCN4AP35499 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC20.39■□□□□ 0.85
SCN4AP35499 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
SCN4AP35499 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC20.38■□□□□ 0.85
SCN4AP35499 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SCN4AP35499 NARF-206ENST00000457415 1668 ntTSL 5 BASIC20.38■□□□□ 0.85
SCN4AP35499 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SCN4AP35499 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SCN4AP35499 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
SCN4AP35499 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SCN4AP35499 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
SCN4AP35499 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC20.38■□□□□ 0.85
SCN4AP35499 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC20.38■□□□□ 0.85
SCN4AP35499 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SCN4AP35499 AL031055.1-201ENST00000606362 631 ntBASIC20.38■□□□□ 0.85
SCN4AP35499 Six3os1_5.1-201ENST00000611000 271 ntBASIC20.38■□□□□ 0.85
SCN4AP35499 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SCN4AP35499 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SCN4AP35499 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SCN4AP35499 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SCN4AP35499 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SCN4AP35499 AC012569.1-201ENST00000591191 1524 ntBASIC20.37■□□□□ 0.85
SCN4AP35499 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SCN4AP35499 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC20.37■□□□□ 0.85
SCN4AP35499 AC073592.3-201ENST00000625118 1834 ntBASIC20.37■□□□□ 0.85
SCN4AP35499 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SCN4AP35499 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SCN4AP35499 MIR346-201ENST00000362234 95 ntBASIC20.37■□□□□ 0.85
SCN4AP35499 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
SCN4AP35499 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
SCN4AP35499 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SCN4AP35499 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC20.37■□□□□ 0.85
SCN4AP35499 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC20.37■□□□□ 0.85
SCN4AP35499 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
SCN4AP35499 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC20.37■□□□□ 0.85
SCN4AP35499 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SCN4AP35499 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SCN4AP35499 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC20.37■□□□□ 0.85
SCN4AP35499 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC20.37■□□□□ 0.85
SCN4AP35499 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
SCN4AP35499 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC20.37■□□□□ 0.85
SCN4AP35499 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SCN4AP35499 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC20.37■□□□□ 0.85
SCN4AP35499 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SCN4AP35499 AP006294.1-201ENST00000415407 339 ntBASIC20.37■□□□□ 0.85
SCN4AP35499 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC20.37■□□□□ 0.85
SCN4AP35499 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC20.37■□□□□ 0.85
SCN4AP35499 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
SCN4AP35499 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC20.37■□□□□ 0.85
SCN4AP35499 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SCN4AP35499 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SCN4AP35499 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
SCN4AP35499 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SCN4AP35499 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC20.36■□□□□ 0.85
SCN4AP35499 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SCN4AP35499 HNRNPRP1-201ENST00000453465 1695 ntBASIC20.36■□□□□ 0.85
SCN4AP35499 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SCN4AP35499 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SCN4AP35499 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SCN4AP35499 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
SCN4AP35499 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SCN4AP35499 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SCN4AP35499 RNU1-129P-201ENST00000384064 167 ntBASIC20.36■□□□□ 0.85
SCN4AP35499 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC20.36■□□□□ 0.85
SCN4AP35499 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC20.36■□□□□ 0.85
SCN4AP35499 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SCN4AP35499 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC20.36■□□□□ 0.85
SCN4AP35499 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC20.36■□□□□ 0.85
SCN4AP35499 NOP2-211ENST00000540228 668 ntTSL 2 BASIC20.36■□□□□ 0.85
SCN4AP35499 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC20.36■□□□□ 0.85
SCN4AP35499 U1.21-201ENST00000580816 167 ntBASIC20.36■□□□□ 0.85
SCN4AP35499 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
SCN4AP35499 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
SCN4AP35499 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SCN4AP35499 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.36■□□□□ 0.85
SCN4AP35499 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC20.36■□□□□ 0.85
SCN4AP35499 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC20.36■□□□□ 0.85
SCN4AP35499 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC20.36■□□□□ 0.85
SCN4AP35499 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC20.36■□□□□ 0.85
SCN4AP35499 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
SCN4AP35499 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SCN4AP35499 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SCN4AP35499 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SCN4AP35499 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC20.35■□□□□ 0.85
SCN4AP35499 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
SCN4AP35499 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC20.35■□□□□ 0.85
SCN4AP35499 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SCN4AP35499 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC20.35■□□□□ 0.85
SCN4AP35499 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms