Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC16.64■□□□□ 0.25
SDC1P18827 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC16.64■□□□□ 0.25
SDC1P18827 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC16.64■□□□□ 0.25
SDC1P18827 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.64■□□□□ 0.25
SDC1P18827 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.64■□□□□ 0.25
SDC1P18827 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.64■□□□□ 0.25
SDC1P18827 CD320-202ENST00000537716 1119 ntTSL 2 BASIC16.64■□□□□ 0.25
SDC1P18827 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SDC1P18827 AC011840.4-201ENST00000578471 627 ntBASIC16.64■□□□□ 0.25
SDC1P18827 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.64■□□□□ 0.25
SDC1P18827 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC1P18827 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC1P18827 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC1P18827 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC1P18827 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.64■□□□□ 0.25
SDC1P18827 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC1P18827 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.64■□□□□ 0.25
SDC1P18827 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SDC1P18827 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SDC1P18827 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC1P18827 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SDC1P18827 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC1P18827 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC1P18827 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.64■□□□□ 0.25
SDC1P18827 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.63■□□□□ 0.25
SDC1P18827 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
SDC1P18827 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.63■□□□□ 0.25
SDC1P18827 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDC1P18827 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDC1P18827 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
SDC1P18827 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDC1P18827 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.63■□□□□ 0.25
SDC1P18827 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
SDC1P18827 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDC1P18827 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SDC1P18827 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.63■□□□□ 0.25
SDC1P18827 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDC1P18827 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDC1P18827 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDC1P18827 FAM220CP-201ENST00000395253 831 ntBASIC16.63■□□□□ 0.25
SDC1P18827 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.63■□□□□ 0.25
SDC1P18827 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.63■□□□□ 0.25
SDC1P18827 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SDC1P18827 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC16.63■□□□□ 0.25
SDC1P18827 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.63■□□□□ 0.25
SDC1P18827 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.63■□□□□ 0.25
SDC1P18827 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDC1P18827 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDC1P18827 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SDC1P18827 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC16.63■□□□□ 0.25
SDC1P18827 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SDC1P18827 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SDC1P18827 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDC1P18827 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDC1P18827 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SDC1P18827 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDC1P18827 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDC1P18827 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.63■□□□□ 0.25
SDC1P18827 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.63■□□□□ 0.25
SDC1P18827 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SDC1P18827 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDC1P18827 AC092053.1-201ENST00000605787 1936 ntBASIC16.62■□□□□ 0.25
SDC1P18827 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.62■□□□□ 0.25
SDC1P18827 KRT8P10-201ENST00000450021 1447 ntBASIC16.62■□□□□ 0.25
SDC1P18827 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
SDC1P18827 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDC1P18827 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDC1P18827 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
SDC1P18827 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDC1P18827 AC124067.4-201ENST00000519691 2379 ntBASIC16.62■□□□□ 0.25
SDC1P18827 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDC1P18827 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDC1P18827 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
SDC1P18827 AL031133.1-201ENST00000406807 723 ntBASIC16.62■□□□□ 0.25
SDC1P18827 AC246785.2-201ENST00000432512 513 ntBASIC16.62■□□□□ 0.25
SDC1P18827 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SDC1P18827 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SDC1P18827 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
SDC1P18827 AC091607.1-201ENST00000490318 1060 ntBASIC16.62■□□□□ 0.25
SDC1P18827 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
SDC1P18827 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.62■□□□□ 0.25
SDC1P18827 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.62■□□□□ 0.25
SDC1P18827 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.62■□□□□ 0.25
SDC1P18827 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.62■□□□□ 0.25
SDC1P18827 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
SDC1P18827 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDC1P18827 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDC1P18827 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SDC1P18827 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.62■□□□□ 0.25
SDC1P18827 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.62■□□□□ 0.25
SDC1P18827 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SDC1P18827 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SDC1P18827 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.61■□□□□ 0.25
SDC1P18827 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDC1P18827 AGGF1P2-201ENST00000426656 2106 ntBASIC16.61■□□□□ 0.25
SDC1P18827 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDC1P18827 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDC1P18827 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
SDC1P18827 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SDC1P18827 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms