Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
HMGA1P17096 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.48
HMGA1P17096 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGA1P17096 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGA1P17096 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGA1P17096 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGA1P17096 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.02■□□□□ 0.48
HMGA1P17096 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGA1P17096 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.02■□□□□ 0.48
HMGA1P17096 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGA1P17096 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
HMGA1P17096 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGA1P17096 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
HMGA1P17096 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC18.02■□□□□ 0.48
HMGA1P17096 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HMGA1P17096 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC18.02■□□□□ 0.48
HMGA1P17096 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.02■□□□□ 0.48
HMGA1P17096 PDPK2P-202ENST00000562415 1191 ntBASIC18.02■□□□□ 0.48
HMGA1P17096 AC005829.1-201ENST00000570002 483 ntBASIC18.02■□□□□ 0.48
HMGA1P17096 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGA1P17096 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC18.02■□□□□ 0.48
HMGA1P17096 C20orf181-201ENST00000623918 480 ntBASIC18.02■□□□□ 0.48
HMGA1P17096 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
HMGA1P17096 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.02■□□□□ 0.47
HMGA1P17096 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC18.02■□□□□ 0.47
HMGA1P17096 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
HMGA1P17096 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
HMGA1P17096 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
HMGA1P17096 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HMGA1P17096 NOC2LP1-202ENST00000452600 2235 ntBASIC18.02■□□□□ 0.47
HMGA1P17096 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC18.02■□□□□ 0.47
HMGA1P17096 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HMGA1P17096 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
HMGA1P17096 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.02■□□□□ 0.47
HMGA1P17096 BCAR1-209ENST00000546196 1340 ntBASIC18.01■□□□□ 0.47
HMGA1P17096 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGA1P17096 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
HMGA1P17096 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
HMGA1P17096 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGA1P17096 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
HMGA1P17096 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGA1P17096 RPS8P6-201ENST00000426177 609 ntBASIC18.01■□□□□ 0.47
HMGA1P17096 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
HMGA1P17096 SLC25A6P2-201ENST00000497974 877 ntBASIC18.01■□□□□ 0.47
HMGA1P17096 CXCL1P1-201ENST00000502804 216 ntBASIC18.01■□□□□ 0.47
HMGA1P17096 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC18.01■□□□□ 0.47
HMGA1P17096 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGA1P17096 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGA1P17096 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC18.01■□□□□ 0.47
HMGA1P17096 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
HMGA1P17096 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGA1P17096 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGA1P17096 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGA1P17096 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGA1P17096 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
HMGA1P17096 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGA1P17096 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGA1P17096 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.01■□□□□ 0.47
HMGA1P17096 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGA1P17096 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.01■□□□□ 0.47
HMGA1P17096 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGA1P17096 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18■□□□□ 0.47
HMGA1P17096 AC025580.3-201ENST00000617932 1424 ntBASIC18■□□□□ 0.47
HMGA1P17096 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGA1P17096 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18■□□□□ 0.47
HMGA1P17096 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC18■□□□□ 0.47
HMGA1P17096 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGA1P17096 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGA1P17096 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
HMGA1P17096 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC18■□□□□ 0.47
HMGA1P17096 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC18■□□□□ 0.47
HMGA1P17096 FAM185BP-201ENST00000443595 716 ntBASIC18■□□□□ 0.47
HMGA1P17096 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC18■□□□□ 0.47
HMGA1P17096 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18■□□□□ 0.47
HMGA1P17096 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGA1P17096 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC18■□□□□ 0.47
HMGA1P17096 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
HMGA1P17096 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
HMGA1P17096 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18■□□□□ 0.47
HMGA1P17096 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18■□□□□ 0.47
HMGA1P17096 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18■□□□□ 0.47
HMGA1P17096 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC18■□□□□ 0.47
HMGA1P17096 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.99■□□□□ 0.47
HMGA1P17096 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGA1P17096 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGA1P17096 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.99■□□□□ 0.47
HMGA1P17096 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGA1P17096 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGA1P17096 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGA1P17096 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGA1P17096 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.99■□□□□ 0.47
HMGA1P17096 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC17.99■□□□□ 0.47
HMGA1P17096 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGA1P17096 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGA1P17096 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGA1P17096 AC211486.1-202ENST00000416371 468 ntBASIC17.99■□□□□ 0.47
HMGA1P17096 HTR5BP-201ENST00000430851 1154 ntBASIC17.99■□□□□ 0.47
HMGA1P17096 AP006288.1-201ENST00000446065 395 ntBASIC17.99■□□□□ 0.47
HMGA1P17096 DNAJB3-202ENST00000449667 1266 ntBASIC17.99■□□□□ 0.47
HMGA1P17096 AC087163.2-201ENST00000457299 853 ntBASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms