Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDLRP01130 FER1L4-210ENST00000615531 5998 ntBASIC16.92■□□□□ 0.3
LDLRP01130 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDLRP01130 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LDLRP01130 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC16.92■□□□□ 0.3
LDLRP01130 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDLRP01130 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDLRP01130 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDLRP01130 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDLRP01130 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LDLRP01130 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDLRP01130 RASA4DP-201ENST00000460726 1199 ntBASIC16.92■□□□□ 0.3
LDLRP01130 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC16.92■□□□□ 0.3
LDLRP01130 AP002414.4-201ENST00000589764 1148 ntBASIC16.92■□□□□ 0.3
LDLRP01130 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
LDLRP01130 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
LDLRP01130 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDLRP01130 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDLRP01130 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDLRP01130 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.92■□□□□ 0.3
LDLRP01130 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDLRP01130 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDLRP01130 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
LDLRP01130 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDLRP01130 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDLRP01130 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDLRP01130 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDLRP01130 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LDLRP01130 AC009102.3-201ENST00000623118 1491 ntBASIC16.92■□□□□ 0.3
LDLRP01130 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC16.92■□□□□ 0.3
LDLRP01130 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDLRP01130 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDLRP01130 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
LDLRP01130 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LDLRP01130 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDLRP01130 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.91■□□□□ 0.3
LDLRP01130 AC018695.7-201ENST00000624587 2492 ntBASIC16.91■□□□□ 0.3
LDLRP01130 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDLRP01130 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.3
LDLRP01130 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDLRP01130 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDLRP01130 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDLRP01130 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDLRP01130 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC16.91■□□□□ 0.3
LDLRP01130 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDLRP01130 ELP6-205ENST00000439305 880 ntTSL 2 BASIC16.91■□□□□ 0.3
LDLRP01130 AC034232.1-201ENST00000506026 1064 ntBASIC16.91■□□□□ 0.3
LDLRP01130 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LDLRP01130 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
LDLRP01130 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC16.91■□□□□ 0.3
LDLRP01130 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDLRP01130 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.91■□□□□ 0.3
LDLRP01130 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.91■□□□□ 0.3
LDLRP01130 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC16.91■□□□□ 0.3
LDLRP01130 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDLRP01130 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
LDLRP01130 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDLRP01130 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC16.91■□□□□ 0.3
LDLRP01130 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDLRP01130 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDLRP01130 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDLRP01130 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC16.91■□□□□ 0.3
LDLRP01130 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LDLRP01130 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
LDLRP01130 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LDLRP01130 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LDLRP01130 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LDLRP01130 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LDLRP01130 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LDLRP01130 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LDLRP01130 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.9■□□□□ 0.3
LDLRP01130 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LDLRP01130 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LDLRP01130 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
LDLRP01130 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.9■□□□□ 0.3
LDLRP01130 TSPY19P-201ENST00000418461 509 ntBASIC16.9■□□□□ 0.3
LDLRP01130 TSPY18P-201ENST00000441642 509 ntBASIC16.9■□□□□ 0.3
LDLRP01130 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC16.9■□□□□ 0.3
LDLRP01130 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LDLRP01130 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
LDLRP01130 AL732292.2-201ENST00000609649 430 ntBASIC16.9■□□□□ 0.3
LDLRP01130 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LDLRP01130 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LDLRP01130 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.9■□□□□ 0.3
LDLRP01130 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LDLRP01130 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LDLRP01130 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.9■□□□□ 0.3
LDLRP01130 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LDLRP01130 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
LDLRP01130 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC16.89■□□□□ 0.29
LDLRP01130 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LDLRP01130 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LDLRP01130 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LDLRP01130 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LDLRP01130 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
LDLRP01130 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.89■□□□□ 0.29
LDLRP01130 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
LDLRP01130 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
LDLRP01130 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LDLRP01130 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms