Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC29.51■■■□□ 2.31
CUX2O14529 MIR1908-201ENST00000410394 80 ntBASIC29.51■■■□□ 2.31
CUX2O14529 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC29.51■■■□□ 2.31
CUX2O14529 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC29.51■■■□□ 2.31
CUX2O14529 STOM-203ENST00000538954 1257 ntTSL 5 BASIC29.51■■■□□ 2.31
CUX2O14529 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC29.51■■■□□ 2.31
CUX2O14529 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC29.51■■■□□ 2.31
CUX2O14529 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC29.51■■■□□ 2.31
CUX2O14529 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC29.51■■■□□ 2.31
CUX2O14529 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
CUX2O14529 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC29.51■■■□□ 2.31
CUX2O14529 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
CUX2O14529 AC093677.2-201ENST00000600169 1863 ntBASIC29.51■■■□□ 2.31
CUX2O14529 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
CUX2O14529 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
CUX2O14529 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC29.5■■■□□ 2.31
CUX2O14529 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
CUX2O14529 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC29.5■■■□□ 2.31
CUX2O14529 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC29.5■■■□□ 2.31
CUX2O14529 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
CUX2O14529 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC29.5■■■□□ 2.31
CUX2O14529 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC29.5■■■□□ 2.31
CUX2O14529 MPI-209ENST00000564003 1195 ntTSL 2 BASIC29.5■■■□□ 2.31
CUX2O14529 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
CUX2O14529 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
CUX2O14529 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC29.5■■■□□ 2.31
CUX2O14529 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC29.5■■■□□ 2.31
CUX2O14529 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC29.5■■■□□ 2.31
CUX2O14529 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
CUX2O14529 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC29.5■■■□□ 2.31
CUX2O14529 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC29.5■■■□□ 2.31
CUX2O14529 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
CUX2O14529 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC29.5■■■□□ 2.31
CUX2O14529 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC29.49■■■□□ 2.31
CUX2O14529 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC29.49■■■□□ 2.31
CUX2O14529 AC099548.2-209ENST00000480264 625 ntBASIC29.49■■■□□ 2.31
CUX2O14529 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
CUX2O14529 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC29.49■■■□□ 2.31
CUX2O14529 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC29.49■■■□□ 2.31
CUX2O14529 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC29.49■■■□□ 2.31
CUX2O14529 RNA5-8SN1-201ENST00000610460 153 ntBASIC29.49■■■□□ 2.31
CUX2O14529 RNA5-8SN5-202ENST00000612463 153 ntBASIC29.49■■■□□ 2.31
CUX2O14529 RNA5-8SN4-201ENST00000613359 153 ntBASIC29.49■■■□□ 2.31
CUX2O14529 RNA5-8SN5-201ENST00000619471 153 ntBASIC29.49■■■□□ 2.31
CUX2O14529 AC004840.1-201ENST00000636359 365 ntBASIC29.49■■■□□ 2.31
CUX2O14529 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC29.49■■■□□ 2.31
CUX2O14529 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC29.49■■■□□ 2.31
CUX2O14529 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC29.49■■■□□ 2.31
CUX2O14529 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC29.49■■■□□ 2.31
CUX2O14529 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
CUX2O14529 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC29.49■■■□□ 2.31
CUX2O14529 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
CUX2O14529 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC29.48■■■□□ 2.31
CUX2O14529 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC29.48■■■□□ 2.31
CUX2O14529 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC29.48■■■□□ 2.31
CUX2O14529 STK25P1-201ENST00000585406 838 ntBASIC29.48■■■□□ 2.31
CUX2O14529 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC29.48■■■□□ 2.31
CUX2O14529 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC29.48■■■□□ 2.31
CUX2O14529 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
CUX2O14529 STX3-203ENST00000529177 1571 ntTSL 2 BASIC29.48■■■□□ 2.31
CUX2O14529 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC29.48■■■□□ 2.31
CUX2O14529 AC018445.3-201ENST00000624177 1945 ntBASIC29.48■■■□□ 2.31
CUX2O14529 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
CUX2O14529 AL590787.1-201ENST00000568856 1315 ntBASIC29.48■■■□□ 2.31
CUX2O14529 GRAMD4P3-201ENST00000621665 1669 ntBASIC29.48■■■□□ 2.31
CUX2O14529 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
CUX2O14529 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
CUX2O14529 AC009407.1-201ENST00000568958 598 ntBASIC29.48■■■□□ 2.31
CUX2O14529 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC29.48■■■□□ 2.31
CUX2O14529 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC29.48■■■□□ 2.31
CUX2O14529 MIR6775-201ENST00000617557 69 ntBASIC29.48■■■□□ 2.31
CUX2O14529 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
CUX2O14529 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC29.48■■■□□ 2.31
CUX2O14529 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC29.47■■■□□ 2.31
CUX2O14529 HARS-203ENST00000431330 1774 ntTSL 2 BASIC29.47■■■□□ 2.31
CUX2O14529 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC29.47■■■□□ 2.31
CUX2O14529 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC29.47■■■□□ 2.31
CUX2O14529 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
CUX2O14529 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC29.47■■■□□ 2.31
CUX2O14529 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
CUX2O14529 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
CUX2O14529 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
CUX2O14529 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC29.47■■■□□ 2.31
CUX2O14529 GOLGA2P4-201ENST00000441462 777 ntBASIC29.47■■■□□ 2.31
CUX2O14529 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
CUX2O14529 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC29.47■■■□□ 2.31
CUX2O14529 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC29.46■■■□□ 2.31
CUX2O14529 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC29.46■■■□□ 2.31
CUX2O14529 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC29.46■■■□□ 2.31
CUX2O14529 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC29.46■■■□□ 2.31
CUX2O14529 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC29.46■■■□□ 2.31
CUX2O14529 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC29.46■■■□□ 2.31
CUX2O14529 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
CUX2O14529 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
CUX2O14529 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC29.46■■■□□ 2.31
CUX2O14529 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC29.46■■■□□ 2.31
CUX2O14529 HIST1H2BPS3-201ENST00000419683 341 ntBASIC29.46■■■□□ 2.31
CUX2O14529 TMEM14DP-201ENST00000422205 345 ntBASIC29.46■■■□□ 2.31
CUX2O14529 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC29.46■■■□□ 2.31
CUX2O14529 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC29.46■■■□□ 2.31
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms