Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL12A1Q99715 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
COL12A1Q99715 UXT-AS1-201ENST00000590504 1525 ntBASIC15.13■□□□□ 0.01
COL12A1Q99715 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC15.13■□□□□ 0.01
COL12A1Q99715 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL12A1Q99715 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC15.13■□□□□ 0.01
COL12A1Q99715 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC15.13■□□□□ 0.01
COL12A1Q99715 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL12A1Q99715 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL12A1Q99715 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL12A1Q99715 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC15.13■□□□□ 0.01
COL12A1Q99715 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL12A1Q99715 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC15.13■□□□□ 0.01
COL12A1Q99715 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL12A1Q99715 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL12A1Q99715 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
COL12A1Q99715 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC15.13■□□□□ 0.01
COL12A1Q99715 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC15.13■□□□□ 0.01
COL12A1Q99715 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL12A1Q99715 HIST1H2BPS3-201ENST00000419683 341 ntBASIC15.13■□□□□ 0.01
COL12A1Q99715 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC15.13■□□□□ 0.01
COL12A1Q99715 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL12A1Q99715 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC15.13■□□□□ 0.01
COL12A1Q99715 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC15.13■□□□□ 0.01
COL12A1Q99715 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL12A1Q99715 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
COL12A1Q99715 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL12A1Q99715 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL12A1Q99715 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC15.13■□□□□ 0.01
COL12A1Q99715 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL12A1Q99715 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC15.12■□□□□ 0.01
COL12A1Q99715 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL12A1Q99715 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL12A1Q99715 SPCS2P4-201ENST00000436160 681 ntBASIC15.12■□□□□ 0.01
COL12A1Q99715 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC15.12■□□□□ 0.01
COL12A1Q99715 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL12A1Q99715 AC027369.6-201ENST00000525520 931 ntBASIC15.12■□□□□ 0.01
COL12A1Q99715 ADM-207ENST00000530439 1839 ntTSL 2 BASIC15.12■□□□□ 0.01
COL12A1Q99715 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL12A1Q99715 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL12A1Q99715 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
COL12A1Q99715 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
COL12A1Q99715 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL12A1Q99715 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL12A1Q99715 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC15.12■□□□□ 0.01
COL12A1Q99715 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC15.12■□□□□ 0.01
COL12A1Q99715 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC15.12■□□□□ 0.01
COL12A1Q99715 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL12A1Q99715 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
COL12A1Q99715 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL12A1Q99715 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
COL12A1Q99715 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL12A1Q99715 AC009477.1-201ENST00000452936 217 ntBASIC15.12■□□□□ 0.01
COL12A1Q99715 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.12■□□□□ 0.01
COL12A1Q99715 FUZ-207ENST00000526575 482 ntTSL 4 BASIC15.12■□□□□ 0.01
COL12A1Q99715 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
COL12A1Q99715 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL12A1Q99715 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC15.12■□□□□ 0.01
COL12A1Q99715 AC009949.1-201ENST00000623048 1830 ntBASIC15.12■□□□□ 0.01
COL12A1Q99715 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL12A1Q99715 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL12A1Q99715 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
COL12A1Q99715 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC15.11■□□□□ 0.01
COL12A1Q99715 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL12A1Q99715 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC15.11■□□□□ 0.01
COL12A1Q99715 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC15.11■□□□□ 0.01
COL12A1Q99715 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
COL12A1Q99715 API5-211ENST00000534695 560 ntTSL 5 BASIC15.11■□□□□ 0.01
COL12A1Q99715 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC15.11■□□□□ 0.01
COL12A1Q99715 NAT9-224ENST00000583757 583 ntTSL 3 BASIC15.11■□□□□ 0.01
COL12A1Q99715 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC15.11■□□□□ 0.01
COL12A1Q99715 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC15.11■□□□□ 0.01
COL12A1Q99715 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL12A1Q99715 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL12A1Q99715 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL12A1Q99715 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC15.11■□□□□ 0.01
COL12A1Q99715 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL12A1Q99715 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL12A1Q99715 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL12A1Q99715 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
COL12A1Q99715 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL12A1Q99715 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL12A1Q99715 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL12A1Q99715 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
COL12A1Q99715 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.11■□□□□ 0.01
COL12A1Q99715 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
COL12A1Q99715 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC15.11■□□□□ 0.01
COL12A1Q99715 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
COL12A1Q99715 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC15.11■□□□□ 0.01
COL12A1Q99715 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL12A1Q99715 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL12A1Q99715 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC15.11■□□□□ 0.01
COL12A1Q99715 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL12A1Q99715 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL12A1Q99715 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL12A1Q99715 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.11■□□□□ 0.01
COL12A1Q99715 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC15.11■□□□□ 0.01
COL12A1Q99715 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL12A1Q99715 COX5BP2-201ENST00000392354 334 ntBASIC15.11■□□□□ 0.01
COL12A1Q99715 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms