Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VMP1Q96GC9 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
VMP1Q96GC9 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC16.8■□□□□ 0.28
VMP1Q96GC9 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VMP1Q96GC9 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VMP1Q96GC9 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VMP1Q96GC9 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VMP1Q96GC9 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
VMP1Q96GC9 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.79■□□□□ 0.28
VMP1Q96GC9 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VMP1Q96GC9 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VMP1Q96GC9 LINC00167-201ENST00000530583 1419 ntBASIC16.79■□□□□ 0.28
VMP1Q96GC9 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
VMP1Q96GC9 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VMP1Q96GC9 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC16.79■□□□□ 0.28
VMP1Q96GC9 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
VMP1Q96GC9 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
VMP1Q96GC9 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.79■□□□□ 0.28
VMP1Q96GC9 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VMP1Q96GC9 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VMP1Q96GC9 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.79■□□□□ 0.28
VMP1Q96GC9 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VMP1Q96GC9 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
VMP1Q96GC9 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
VMP1Q96GC9 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
VMP1Q96GC9 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VMP1Q96GC9 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
VMP1Q96GC9 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.79■□□□□ 0.28
VMP1Q96GC9 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
VMP1Q96GC9 AC011840.4-201ENST00000578471 627 ntBASIC16.79■□□□□ 0.28
VMP1Q96GC9 MIR3652-201ENST00000579335 131 ntBASIC16.79■□□□□ 0.28
VMP1Q96GC9 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.79■□□□□ 0.28
VMP1Q96GC9 Z69720.1-201ENST00000601483 472 ntBASIC16.79■□□□□ 0.28
VMP1Q96GC9 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VMP1Q96GC9 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VMP1Q96GC9 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VMP1Q96GC9 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VMP1Q96GC9 AC022211.2-201ENST00000585075 2527 ntBASIC16.79■□□□□ 0.28
VMP1Q96GC9 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
VMP1Q96GC9 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VMP1Q96GC9 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VMP1Q96GC9 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VMP1Q96GC9 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VMP1Q96GC9 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.79■□□□□ 0.28
VMP1Q96GC9 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.79■□□□□ 0.28
VMP1Q96GC9 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.79■□□□□ 0.28
VMP1Q96GC9 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
VMP1Q96GC9 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VMP1Q96GC9 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VMP1Q96GC9 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VMP1Q96GC9 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VMP1Q96GC9 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.78■□□□□ 0.28
VMP1Q96GC9 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
VMP1Q96GC9 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VMP1Q96GC9 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VMP1Q96GC9 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.78■□□□□ 0.28
VMP1Q96GC9 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VMP1Q96GC9 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VMP1Q96GC9 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.78■□□□□ 0.28
VMP1Q96GC9 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VMP1Q96GC9 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.78■□□□□ 0.28
VMP1Q96GC9 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
VMP1Q96GC9 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VMP1Q96GC9 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
VMP1Q96GC9 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.78■□□□□ 0.28
VMP1Q96GC9 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VMP1Q96GC9 AC246785.2-201ENST00000432512 513 ntBASIC16.78■□□□□ 0.28
VMP1Q96GC9 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.78■□□□□ 0.28
VMP1Q96GC9 AP000867.3-201ENST00000524675 377 ntBASIC16.78■□□□□ 0.28
VMP1Q96GC9 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VMP1Q96GC9 CBFB-203ENST00000561924 584 ntTSL 5 BASIC16.78■□□□□ 0.28
VMP1Q96GC9 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.78■□□□□ 0.28
VMP1Q96GC9 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VMP1Q96GC9 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.78■□□□□ 0.28
VMP1Q96GC9 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VMP1Q96GC9 PHGDH-209ENST00000641074 1780 ntBASIC16.78■□□□□ 0.28
VMP1Q96GC9 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
VMP1Q96GC9 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
VMP1Q96GC9 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.78■□□□□ 0.28
VMP1Q96GC9 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.78■□□□□ 0.28
VMP1Q96GC9 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VMP1Q96GC9 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VMP1Q96GC9 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VMP1Q96GC9 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VMP1Q96GC9 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VMP1Q96GC9 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.78■□□□□ 0.28
VMP1Q96GC9 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VMP1Q96GC9 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VMP1Q96GC9 AC233702.3-201ENST00000578656 1387 ntBASIC16.77■□□□□ 0.28
VMP1Q96GC9 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
VMP1Q96GC9 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
VMP1Q96GC9 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.77■□□□□ 0.28
VMP1Q96GC9 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VMP1Q96GC9 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
VMP1Q96GC9 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
VMP1Q96GC9 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.77■□□□□ 0.28
VMP1Q96GC9 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VMP1Q96GC9 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VMP1Q96GC9 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VMP1Q96GC9 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms