Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC107890.1-201ENST00000422478 521 ntBASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 NOP2-220ENST00000545915 630 ntTSL 2 BASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 SRP9-204ENST00000619790 377 ntTSL 2 BASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 AC025048.6-201ENST00000634326 1161 ntBASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 WRB-204ENST00000398753 699 ntTSL 3 BASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 AC026120.1-201ENST00000611536 926 ntBASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 AC116407.2-201ENST00000613639 860 ntBASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 TREML5P-201ENST00000421694 576 ntBASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 AC009113.1-201ENST00000570267 2443 ntBASIC21.22■□□□□ 0.99
CCDC88AQ3V6T2 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
CCDC88AQ3V6T2 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC88AQ3V6T2 TDG-209ENST00000544861 1387 ntTSL 2 BASIC21.21■□□□□ 0.99
CCDC88AQ3V6T2 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC88AQ3V6T2 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
CCDC88AQ3V6T2 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC88AQ3V6T2 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC21.21■□□□□ 0.99
CCDC88AQ3V6T2 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC21.21■□□□□ 0.99
CCDC88AQ3V6T2 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC88AQ3V6T2 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC88AQ3V6T2 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
CCDC88AQ3V6T2 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC88AQ3V6T2 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC21.21■□□□□ 0.99
CCDC88AQ3V6T2 AL020996.1-203ENST00000536896 2307 ntBASIC21.21■□□□□ 0.99
CCDC88AQ3V6T2 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC21.21■□□□□ 0.99
CCDC88AQ3V6T2 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
CCDC88AQ3V6T2 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.99
CCDC88AQ3V6T2 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 CD81-202ENST00000381036 880 ntTSL 3 BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 STK4-201ENST00000372801 2038 ntTSL 2 BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 GRAP-202ENST00000395635 834 ntTSL 2 BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 TERF1P3-201ENST00000505638 1227 ntBASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 AL008721.1-201ENST00000609964 604 ntBASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC88AQ3V6T2 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC88AQ3V6T2 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC88AQ3V6T2 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC88AQ3V6T2 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC88AQ3V6T2 VMA21-202ENST00000370361 693 ntTSL 5 BASIC21.19■□□□□ 0.98
CCDC88AQ3V6T2 AL592309.1-201ENST00000443127 649 ntBASIC21.19■□□□□ 0.98
CCDC88AQ3V6T2 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC88AQ3V6T2 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
CCDC88AQ3V6T2 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC88AQ3V6T2 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CCDC88AQ3V6T2 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC88AQ3V6T2 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC88AQ3V6T2 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC88AQ3V6T2 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC88AQ3V6T2 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC88AQ3V6T2 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC88AQ3V6T2 HARS-201ENST00000307633 1780 ntTSL 2 BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms