Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
PRKDCP78527 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC12.47□□□□□ -0.41
PRKDCP78527 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC12.47□□□□□ -0.41
PRKDCP78527 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC12.47□□□□□ -0.41
PRKDCP78527 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
PRKDCP78527 HNRNPA3P1-201ENST00000401429 1139 ntBASIC12.47□□□□□ -0.41
PRKDCP78527 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC12.47□□□□□ -0.41
PRKDCP78527 HNRNPA3P5-201ENST00000455201 833 ntBASIC12.47□□□□□ -0.41
PRKDCP78527 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC12.47□□□□□ -0.41
PRKDCP78527 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC12.47□□□□□ -0.41
PRKDCP78527 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC12.47□□□□□ -0.41
PRKDCP78527 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC12.47□□□□□ -0.41
PRKDCP78527 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
PRKDCP78527 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PRKDCP78527 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
PRKDCP78527 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
PRKDCP78527 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PRKDCP78527 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PRKDCP78527 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
PRKDCP78527 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC12.47□□□□□ -0.41
PRKDCP78527 ALG1L8P-201ENST00000533887 760 ntBASIC12.47□□□□□ -0.41
PRKDCP78527 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC12.47□□□□□ -0.41
PRKDCP78527 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC12.47□□□□□ -0.41
PRKDCP78527 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
PRKDCP78527 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PRKDCP78527 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC12.47□□□□□ -0.41
PRKDCP78527 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PRKDCP78527 AC006538.1-201ENST00000567905 1585 ntBASIC12.47□□□□□ -0.41
PRKDCP78527 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PRKDCP78527 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC12.47□□□□□ -0.41
PRKDCP78527 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PRKDCP78527 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PRKDCP78527 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC12.47□□□□□ -0.41
PRKDCP78527 PRR29-204ENST00000577953 565 ntTSL 4 BASIC12.47□□□□□ -0.41
PRKDCP78527 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC12.47□□□□□ -0.41
PRKDCP78527 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
PRKDCP78527 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC12.47□□□□□ -0.41
PRKDCP78527 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
PRKDCP78527 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
PRKDCP78527 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PRKDCP78527 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
PRKDCP78527 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PRKDCP78527 HMGA1P7-201ENST00000406908 502 ntBASIC12.47□□□□□ -0.41
PRKDCP78527 TTTY23B-201ENST00000442790 549 ntBASIC12.47□□□□□ -0.41
PRKDCP78527 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC12.47□□□□□ -0.41
PRKDCP78527 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC12.47□□□□□ -0.41
PRKDCP78527 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
PRKDCP78527 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PRKDCP78527 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC12.47□□□□□ -0.41
PRKDCP78527 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
PRKDCP78527 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC12.46□□□□□ -0.41
PRKDCP78527 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
PRKDCP78527 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
PRKDCP78527 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
PRKDCP78527 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
PRKDCP78527 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC12.46□□□□□ -0.41
PRKDCP78527 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
PRKDCP78527 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
PRKDCP78527 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC12.46□□□□□ -0.41
PRKDCP78527 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC12.46□□□□□ -0.41
PRKDCP78527 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC12.46□□□□□ -0.41
PRKDCP78527 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.41
PRKDCP78527 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC12.46□□□□□ -0.41
PRKDCP78527 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
PRKDCP78527 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC12.46□□□□□ -0.41
PRKDCP78527 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
PRKDCP78527 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
PRKDCP78527 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC12.46□□□□□ -0.41
PRKDCP78527 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
PRKDCP78527 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC12.46□□□□□ -0.41
PRKDCP78527 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
PRKDCP78527 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
PRKDCP78527 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
PRKDCP78527 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC12.46□□□□□ -0.41
PRKDCP78527 ELK1P1-201ENST00000485699 580 ntBASIC12.46□□□□□ -0.41
PRKDCP78527 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC12.46□□□□□ -0.41
PRKDCP78527 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC12.46□□□□□ -0.41
PRKDCP78527 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC12.46□□□□□ -0.41
PRKDCP78527 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
PRKDCP78527 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC12.46□□□□□ -0.42
PRKDCP78527 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
PRKDCP78527 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC12.46□□□□□ -0.42
PRKDCP78527 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
PRKDCP78527 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC12.46□□□□□ -0.42
PRKDCP78527 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
PRKDCP78527 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC12.46□□□□□ -0.42
PRKDCP78527 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC12.46□□□□□ -0.42
PRKDCP78527 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC12.46□□□□□ -0.42
PRKDCP78527 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
PRKDCP78527 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
PRKDCP78527 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC12.45□□□□□ -0.42
PRKDCP78527 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
PRKDCP78527 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC12.45□□□□□ -0.42
PRKDCP78527 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
PRKDCP78527 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
PRKDCP78527 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC12.45□□□□□ -0.42
PRKDCP78527 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
PRKDCP78527 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
PRKDCP78527 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
PRKDCP78527 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms