Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PKNOX1P55347 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PKNOX1P55347 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PKNOX1P55347 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PKNOX1P55347 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
PKNOX1P55347 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
PKNOX1P55347 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PKNOX1P55347 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
PKNOX1P55347 MIR662-201ENST00000384847 95 ntBASIC17.19■□□□□ 0.34
PKNOX1P55347 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PKNOX1P55347 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PKNOX1P55347 AL137013.1-201ENST00000432946 1228 ntBASIC17.19■□□□□ 0.34
PKNOX1P55347 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.19■□□□□ 0.34
PKNOX1P55347 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PKNOX1P55347 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.19■□□□□ 0.34
PKNOX1P55347 ZNF444P1-201ENST00000559497 298 ntBASIC17.19■□□□□ 0.34
PKNOX1P55347 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PKNOX1P55347 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.19■□□□□ 0.34
PKNOX1P55347 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.19■□□□□ 0.34
PKNOX1P55347 AC139887.4-201ENST00000607877 719 ntBASIC17.19■□□□□ 0.34
PKNOX1P55347 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
PKNOX1P55347 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.19■□□□□ 0.34
PKNOX1P55347 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.19■□□□□ 0.34
PKNOX1P55347 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.19■□□□□ 0.34
PKNOX1P55347 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
PKNOX1P55347 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PKNOX1P55347 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PKNOX1P55347 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
PKNOX1P55347 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PKNOX1P55347 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
PKNOX1P55347 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PKNOX1P55347 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PKNOX1P55347 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PKNOX1P55347 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.19■□□□□ 0.34
PKNOX1P55347 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PKNOX1P55347 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
PKNOX1P55347 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PKNOX1P55347 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PKNOX1P55347 AL353692.3-201ENST00000407031 1396 ntBASIC17.18■□□□□ 0.34
PKNOX1P55347 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
PKNOX1P55347 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PKNOX1P55347 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PKNOX1P55347 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
PKNOX1P55347 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
PKNOX1P55347 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PKNOX1P55347 TERF1P1-201ENST00000311003 1181 ntBASIC17.18■□□□□ 0.34
PKNOX1P55347 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.18■□□□□ 0.34
PKNOX1P55347 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.18■□□□□ 0.34
PKNOX1P55347 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.18■□□□□ 0.34
PKNOX1P55347 AC092597.1-201ENST00000487352 616 ntBASIC17.18■□□□□ 0.34
PKNOX1P55347 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.18■□□□□ 0.34
PKNOX1P55347 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.18■□□□□ 0.34
PKNOX1P55347 AC012306.2-201ENST00000609350 630 ntBASIC17.18■□□□□ 0.34
PKNOX1P55347 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.18■□□□□ 0.34
PKNOX1P55347 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.18■□□□□ 0.34
PKNOX1P55347 AC097493.4-201ENST00000641197 219 ntBASIC17.18■□□□□ 0.34
PKNOX1P55347 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
PKNOX1P55347 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.18■□□□□ 0.34
PKNOX1P55347 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PKNOX1P55347 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PKNOX1P55347 AC016396.2-201ENST00000562575 1417 ntBASIC17.18■□□□□ 0.34
PKNOX1P55347 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
PKNOX1P55347 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.18■□□□□ 0.34
PKNOX1P55347 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PKNOX1P55347 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.18■□□□□ 0.34
PKNOX1P55347 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PKNOX1P55347 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PKNOX1P55347 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PKNOX1P55347 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PKNOX1P55347 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PKNOX1P55347 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PKNOX1P55347 CICP6-201ENST00000457191 2729 ntBASIC17.18■□□□□ 0.34
PKNOX1P55347 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PKNOX1P55347 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.18■□□□□ 0.34
PKNOX1P55347 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.18■□□□□ 0.34
PKNOX1P55347 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
PKNOX1P55347 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.17■□□□□ 0.34
PKNOX1P55347 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.17■□□□□ 0.34
PKNOX1P55347 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
PKNOX1P55347 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PKNOX1P55347 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.17■□□□□ 0.34
PKNOX1P55347 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 139.1 ms