Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LIMK1P53667 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.26■□□□□ 0.35
LIMK1P53667 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LIMK1P53667 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.26■□□□□ 0.35
LIMK1P53667 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMK1P53667 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMK1P53667 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMK1P53667 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.26■□□□□ 0.35
LIMK1P53667 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMK1P53667 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LIMK1P53667 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMK1P53667 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMK1P53667 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMK1P53667 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LIMK1P53667 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.25■□□□□ 0.35
LIMK1P53667 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LIMK1P53667 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.25■□□□□ 0.35
LIMK1P53667 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMK1P53667 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMK1P53667 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.25■□□□□ 0.35
LIMK1P53667 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LIMK1P53667 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMK1P53667 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.25■□□□□ 0.35
LIMK1P53667 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMK1P53667 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
LIMK1P53667 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMK1P53667 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
LIMK1P53667 MRPL20P1-201ENST00000400819 433 ntBASIC17.25■□□□□ 0.35
LIMK1P53667 AL020989.1-201ENST00000422979 469 ntBASIC17.25■□□□□ 0.35
LIMK1P53667 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.25■□□□□ 0.35
LIMK1P53667 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC17.25■□□□□ 0.35
LIMK1P53667 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.25■□□□□ 0.35
LIMK1P53667 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.25■□□□□ 0.35
LIMK1P53667 AL353135.1-201ENST00000606729 504 ntBASIC17.25■□□□□ 0.35
LIMK1P53667 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC17.25■□□□□ 0.35
LIMK1P53667 AC010507.1-201ENST00000633895 436 ntBASIC17.25■□□□□ 0.35
LIMK1P53667 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMK1P53667 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
LIMK1P53667 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
LIMK1P53667 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMK1P53667 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMK1P53667 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
LIMK1P53667 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.24■□□□□ 0.35
LIMK1P53667 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.24■□□□□ 0.35
LIMK1P53667 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIMK1P53667 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIMK1P53667 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIMK1P53667 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
LIMK1P53667 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC17.24■□□□□ 0.35
LIMK1P53667 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC17.24■□□□□ 0.35
LIMK1P53667 AC109322.1-201ENST00000524499 1264 ntBASIC17.24■□□□□ 0.35
LIMK1P53667 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC17.24■□□□□ 0.35
LIMK1P53667 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.24■□□□□ 0.35
LIMK1P53667 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.24■□□□□ 0.35
LIMK1P53667 AC091812.2-201ENST00000619081 385 ntBASIC17.24■□□□□ 0.35
LIMK1P53667 LINC00628-201ENST00000628516 1289 ntBASIC17.24■□□□□ 0.35
LIMK1P53667 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC17.24■□□□□ 0.35
LIMK1P53667 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
LIMK1P53667 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.24■□□□□ 0.35
LIMK1P53667 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIMK1P53667 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.24■□□□□ 0.35
LIMK1P53667 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.24■□□□□ 0.35
LIMK1P53667 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIMK1P53667 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIMK1P53667 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.24■□□□□ 0.35
LIMK1P53667 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIMK1P53667 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.24■□□□□ 0.35
LIMK1P53667 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIMK1P53667 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIMK1P53667 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
LIMK1P53667 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIMK1P53667 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
LIMK1P53667 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIMK1P53667 AL121761.2-201ENST00000598007 1648 ntBASIC17.23■□□□□ 0.35
LIMK1P53667 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIMK1P53667 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.23■□□□□ 0.35
LIMK1P53667 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LIMK1P53667 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIMK1P53667 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC17.23■□□□□ 0.35
LIMK1P53667 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
LIMK1P53667 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.23■□□□□ 0.35
LIMK1P53667 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC17.23■□□□□ 0.35
LIMK1P53667 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LIMK1P53667 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC17.23■□□□□ 0.35
LIMK1P53667 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.23■□□□□ 0.35
LIMK1P53667 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.23■□□□□ 0.35
LIMK1P53667 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC17.23■□□□□ 0.35
LIMK1P53667 AC073592.5-201ENST00000624854 528 ntBASIC17.23■□□□□ 0.35
LIMK1P53667 AC007064.4-201ENST00000637740 555 ntBASIC17.23■□□□□ 0.35
LIMK1P53667 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC17.23■□□□□ 0.35
LIMK1P53667 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
LIMK1P53667 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIMK1P53667 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LIMK1P53667 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LIMK1P53667 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
LIMK1P53667 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.23■□□□□ 0.35
LIMK1P53667 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC17.23■□□□□ 0.35
LIMK1P53667 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIMK1P53667 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
LIMK1P53667 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms