Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
UPK1AO00322 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.6■□□□□ 0.25
UPK1AO00322 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
UPK1AO00322 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.6■□□□□ 0.25
UPK1AO00322 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
UPK1AO00322 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
UPK1AO00322 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
UPK1AO00322 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
UPK1AO00322 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
UPK1AO00322 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
UPK1AO00322 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
UPK1AO00322 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC16.6■□□□□ 0.25
UPK1AO00322 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
UPK1AO00322 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
UPK1AO00322 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
UPK1AO00322 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
UPK1AO00322 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.6■□□□□ 0.25
UPK1AO00322 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
UPK1AO00322 IGHV3-41-201ENST00000613121 348 ntBASIC16.6■□□□□ 0.25
UPK1AO00322 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.6■□□□□ 0.25
UPK1AO00322 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC16.6■□□□□ 0.25
UPK1AO00322 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
UPK1AO00322 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
UPK1AO00322 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
UPK1AO00322 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.6■□□□□ 0.25
UPK1AO00322 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.6■□□□□ 0.25
UPK1AO00322 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
UPK1AO00322 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
UPK1AO00322 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
UPK1AO00322 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
UPK1AO00322 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
UPK1AO00322 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.6■□□□□ 0.25
UPK1AO00322 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
UPK1AO00322 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.59■□□□□ 0.25
UPK1AO00322 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
UPK1AO00322 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
UPK1AO00322 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
UPK1AO00322 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
UPK1AO00322 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.59■□□□□ 0.25
UPK1AO00322 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
UPK1AO00322 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
UPK1AO00322 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
UPK1AO00322 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.59■□□□□ 0.25
UPK1AO00322 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
UPK1AO00322 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
UPK1AO00322 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
UPK1AO00322 PCED1CP-201ENST00000419887 785 ntBASIC16.59■□□□□ 0.25
UPK1AO00322 AC096633.1-201ENST00000422446 749 ntBASIC16.59■□□□□ 0.25
UPK1AO00322 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
UPK1AO00322 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.59■□□□□ 0.25
UPK1AO00322 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
UPK1AO00322 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.59■□□□□ 0.25
UPK1AO00322 AL353801.3-201ENST00000609898 542 ntBASIC16.59■□□□□ 0.25
UPK1AO00322 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
UPK1AO00322 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
UPK1AO00322 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
UPK1AO00322 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
UPK1AO00322 AC090340.1-201ENST00000620778 4980 ntBASIC16.59■□□□□ 0.25
UPK1AO00322 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
UPK1AO00322 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
UPK1AO00322 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
UPK1AO00322 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.59■□□□□ 0.25
UPK1AO00322 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
UPK1AO00322 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
UPK1AO00322 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
UPK1AO00322 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.58■□□□□ 0.25
UPK1AO00322 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
UPK1AO00322 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
UPK1AO00322 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
UPK1AO00322 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
UPK1AO00322 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
UPK1AO00322 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
UPK1AO00322 CICP6-201ENST00000457191 2729 ntBASIC16.58■□□□□ 0.25
UPK1AO00322 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
UPK1AO00322 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
UPK1AO00322 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.24
UPK1AO00322 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
UPK1AO00322 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
UPK1AO00322 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
UPK1AO00322 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
UPK1AO00322 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
UPK1AO00322 AL845331.1-201ENST00000424978 1190 ntBASIC16.58■□□□□ 0.24
UPK1AO00322 BX276092.5-203ENST00000456199 560 ntBASIC16.58■□□□□ 0.24
UPK1AO00322 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.58■□□□□ 0.24
UPK1AO00322 AL121672.3-201ENST00000608644 468 ntBASIC16.58■□□□□ 0.24
UPK1AO00322 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC16.58■□□□□ 0.24
UPK1AO00322 LINC01451-201ENST00000623792 534 ntBASIC16.58■□□□□ 0.24
UPK1AO00322 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
UPK1AO00322 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC16.58■□□□□ 0.24
UPK1AO00322 AC097374.2-201ENST00000618617 1306 ntBASIC16.58■□□□□ 0.24
UPK1AO00322 AC016734.2-201ENST00000624325 1377 ntBASIC16.58■□□□□ 0.24
UPK1AO00322 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
UPK1AO00322 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
UPK1AO00322 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
UPK1AO00322 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
UPK1AO00322 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
UPK1AO00322 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
UPK1AO00322 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
UPK1AO00322 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
UPK1AO00322 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms