Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col13a1Q9R1N9 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Col13a1Q9R1N9 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col13a1Q9R1N9 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col13a1Q9R1N9 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col13a1Q9R1N9 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col13a1Q9R1N9 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC18.74■□□□□ 0.59
Col13a1Q9R1N9 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Col13a1Q9R1N9 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC18.74■□□□□ 0.59
Col13a1Q9R1N9 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Col13a1Q9R1N9 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col13a1Q9R1N9 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col13a1Q9R1N9 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col13a1Q9R1N9 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col13a1Q9R1N9 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col13a1Q9R1N9 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Col13a1Q9R1N9 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Col13a1Q9R1N9 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col13a1Q9R1N9 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col13a1Q9R1N9 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col13a1Q9R1N9 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col13a1Q9R1N9 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Col13a1Q9R1N9 Gm20634-201ENSMUST00000090779 2956 ntBASIC18.72■□□□□ 0.59
Col13a1Q9R1N9 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC18.72■□□□□ 0.59
Col13a1Q9R1N9 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Col13a1Q9R1N9 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
Col13a1Q9R1N9 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Col13a1Q9R1N9 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col13a1Q9R1N9 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col13a1Q9R1N9 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col13a1Q9R1N9 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Col13a1Q9R1N9 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Col13a1Q9R1N9 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col13a1Q9R1N9 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
Col13a1Q9R1N9 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col13a1Q9R1N9 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Col13a1Q9R1N9 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col13a1Q9R1N9 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC18.7■□□□□ 0.58
Col13a1Q9R1N9 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Col13a1Q9R1N9 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col13a1Q9R1N9 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC18.7■□□□□ 0.58
Col13a1Q9R1N9 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC18.7■□□□□ 0.58
Col13a1Q9R1N9 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC18.7■□□□□ 0.58
Col13a1Q9R1N9 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Col13a1Q9R1N9 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col13a1Q9R1N9 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col13a1Q9R1N9 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col13a1Q9R1N9 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col13a1Q9R1N9 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col13a1Q9R1N9 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC18.69■□□□□ 0.58
Col13a1Q9R1N9 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col13a1Q9R1N9 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC18.68■□□□□ 0.58
Col13a1Q9R1N9 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC18.68■□□□□ 0.58
Col13a1Q9R1N9 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Col13a1Q9R1N9 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Col13a1Q9R1N9 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col13a1Q9R1N9 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col13a1Q9R1N9 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col13a1Q9R1N9 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col13a1Q9R1N9 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC18.67■□□□□ 0.58
Col13a1Q9R1N9 AC117769.4-201ENSMUST00000225679 685 ntBASIC18.67■□□□□ 0.58
Col13a1Q9R1N9 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col13a1Q9R1N9 Gm10232-201ENSMUST00000089221 720 ntBASIC18.67■□□□□ 0.58
Col13a1Q9R1N9 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC18.67■□□□□ 0.58
Col13a1Q9R1N9 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col13a1Q9R1N9 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col13a1Q9R1N9 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col13a1Q9R1N9 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col13a1Q9R1N9 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col13a1Q9R1N9 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col13a1Q9R1N9 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col13a1Q9R1N9 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Col13a1Q9R1N9 AC122428.3-201ENSMUST00000215551 2290 ntBASIC18.66■□□□□ 0.58
Col13a1Q9R1N9 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Col13a1Q9R1N9 Gm14121-201ENSMUST00000121441 1380 ntBASIC18.66■□□□□ 0.58
Col13a1Q9R1N9 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Col13a1Q9R1N9 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Col13a1Q9R1N9 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col13a1Q9R1N9 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col13a1Q9R1N9 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC18.65■□□□□ 0.58
Col13a1Q9R1N9 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Col13a1Q9R1N9 Gm43034-201ENSMUST00000198678 1364 ntBASIC18.65■□□□□ 0.58
Col13a1Q9R1N9 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col13a1Q9R1N9 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col13a1Q9R1N9 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC18.64■□□□□ 0.57
Col13a1Q9R1N9 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC18.64■□□□□ 0.57
Col13a1Q9R1N9 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col13a1Q9R1N9 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC18.63■□□□□ 0.57
Col13a1Q9R1N9 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col13a1Q9R1N9 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col13a1Q9R1N9 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col13a1Q9R1N9 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col13a1Q9R1N9 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col13a1Q9R1N9 Gm13241-201ENSMUST00000094493 780 ntBASIC18.62■□□□□ 0.57
Col13a1Q9R1N9 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col13a1Q9R1N9 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col13a1Q9R1N9 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
Col13a1Q9R1N9 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col13a1Q9R1N9 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col13a1Q9R1N9 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 152.2 ms