Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Gm25239-201ENSMUST00000174915 86 ntBASIC33.3■■■□□ 2.92
Col13a1Q9R1N9 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
Col13a1Q9R1N9 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Col13a1Q9R1N9 Gm24109-201ENSMUST00000175489 103 ntBASIC29.18■■■□□ 2.26
Col13a1Q9R1N9 Gm15042-201ENSMUST00000120212 883 ntBASIC28.53■■■□□ 2.16
Col13a1Q9R1N9 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
Col13a1Q9R1N9 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
Col13a1Q9R1N9 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
Col13a1Q9R1N9 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
Col13a1Q9R1N9 Gm15045-201ENSMUST00000117359 883 ntBASIC27.78■■■□□ 2.04
Col13a1Q9R1N9 Gm23366-201ENSMUST00000175022 89 ntBASIC27.72■■■□□ 2.03
Col13a1Q9R1N9 AC153911.1-202ENSMUST00000218534 1034 ntBASIC27.43■■□□□ 1.98
Col13a1Q9R1N9 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Col13a1Q9R1N9 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC27.17■■□□□ 1.94
Col13a1Q9R1N9 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Col13a1Q9R1N9 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Col13a1Q9R1N9 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC27.08■■□□□ 1.93
Col13a1Q9R1N9 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Col13a1Q9R1N9 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Col13a1Q9R1N9 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC26.5■■□□□ 1.83
Col13a1Q9R1N9 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC26.48■■□□□ 1.83
Col13a1Q9R1N9 Gm25238-201ENSMUST00000174914 89 ntBASIC26.48■■□□□ 1.83
Col13a1Q9R1N9 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Col13a1Q9R1N9 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Col13a1Q9R1N9 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
Col13a1Q9R1N9 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
Col13a1Q9R1N9 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC25.83■■□□□ 1.73
Col13a1Q9R1N9 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
Col13a1Q9R1N9 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
Col13a1Q9R1N9 Gm25262-201ENSMUST00000174934 133 ntBASIC25.63■■□□□ 1.69
Col13a1Q9R1N9 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Col13a1Q9R1N9 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC25.46■■□□□ 1.67
Col13a1Q9R1N9 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC25.42■■□□□ 1.66
Col13a1Q9R1N9 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC25.36■■□□□ 1.65
Col13a1Q9R1N9 Psd-208ENSMUST00000224556 2034 ntBASIC25.36■■□□□ 1.65
Col13a1Q9R1N9 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Col13a1Q9R1N9 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC25.25■■□□□ 1.63
Col13a1Q9R1N9 Gm26115-201ENSMUST00000175605 87 ntBASIC25.24■■□□□ 1.63
Col13a1Q9R1N9 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Col13a1Q9R1N9 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC25.2■■□□□ 1.62
Col13a1Q9R1N9 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC25.2■■□□□ 1.62
Col13a1Q9R1N9 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Col13a1Q9R1N9 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC25.17■■□□□ 1.62
Col13a1Q9R1N9 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
Col13a1Q9R1N9 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC25.13■■□□□ 1.61
Col13a1Q9R1N9 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
Col13a1Q9R1N9 Gm8109-201ENSMUST00000194076 746 ntBASIC25.04■■□□□ 1.6
Col13a1Q9R1N9 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Col13a1Q9R1N9 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC25■■□□□ 1.59
Col13a1Q9R1N9 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
Col13a1Q9R1N9 Gm27325-201ENSMUST00000175467 74 ntBASIC24.89■■□□□ 1.58
Col13a1Q9R1N9 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC24.83■■□□□ 1.57
Col13a1Q9R1N9 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
Col13a1Q9R1N9 Rab21-202ENSMUST00000218831 843 ntBASIC24.8■■□□□ 1.56
Col13a1Q9R1N9 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC24.76■■□□□ 1.55
Col13a1Q9R1N9 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
Col13a1Q9R1N9 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Col13a1Q9R1N9 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Col13a1Q9R1N9 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Col13a1Q9R1N9 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC24.52■■□□□ 1.52
Col13a1Q9R1N9 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Col13a1Q9R1N9 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Col13a1Q9R1N9 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC24.49■■□□□ 1.51
Col13a1Q9R1N9 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC24.45■■□□□ 1.5
Col13a1Q9R1N9 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC24.43■■□□□ 1.5
Col13a1Q9R1N9 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Col13a1Q9R1N9 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Col13a1Q9R1N9 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Col13a1Q9R1N9 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Col13a1Q9R1N9 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Col13a1Q9R1N9 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Col13a1Q9R1N9 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC24.21■■□□□ 1.47
Col13a1Q9R1N9 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Col13a1Q9R1N9 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
Col13a1Q9R1N9 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Col13a1Q9R1N9 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
Col13a1Q9R1N9 Gm24804-201ENSMUST00000174982 85 ntBASIC24.12■■□□□ 1.45
Col13a1Q9R1N9 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
Col13a1Q9R1N9 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC24.1■■□□□ 1.45
Col13a1Q9R1N9 Gm17082-201ENSMUST00000166043 1091 ntBASIC24.05■■□□□ 1.44
Col13a1Q9R1N9 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC24.03■■□□□ 1.44
Col13a1Q9R1N9 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC23.97■■□□□ 1.43
Col13a1Q9R1N9 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Col13a1Q9R1N9 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
Col13a1Q9R1N9 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Col13a1Q9R1N9 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Col13a1Q9R1N9 Gm27322-201ENSMUST00000184007 104 ntBASIC23.84■■□□□ 1.41
Col13a1Q9R1N9 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC23.84■■□□□ 1.41
Col13a1Q9R1N9 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC23.82■■□□□ 1.4
Col13a1Q9R1N9 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
Col13a1Q9R1N9 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Col13a1Q9R1N9 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
Col13a1Q9R1N9 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC23.71■■□□□ 1.39
Col13a1Q9R1N9 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
Col13a1Q9R1N9 Zfp131-205ENSMUST00000223812 663 ntBASIC23.68■■□□□ 1.38
Col13a1Q9R1N9 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Col13a1Q9R1N9 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Col13a1Q9R1N9 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Col13a1Q9R1N9 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC23.66■■□□□ 1.38
Col13a1Q9R1N9 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
Retrieved 100 of 76,532 protein–RNA pairs in 8.1 ms