Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cdx1P18111 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cdx1P18111 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cdx1P18111 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC17.63■□□□□ 0.41
Cdx1P18111 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cdx1P18111 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cdx1P18111 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Cdx1P18111 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cdx1P18111 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cdx1P18111 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Cdx1P18111 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
Cdx1P18111 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Cdx1P18111 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC17.61■□□□□ 0.41
Cdx1P18111 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC17.61■□□□□ 0.41
Cdx1P18111 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Cdx1P18111 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Cdx1P18111 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cdx1P18111 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cdx1P18111 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cdx1P18111 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cdx1P18111 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Cdx1P18111 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Cdx1P18111 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cdx1P18111 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Cdx1P18111 Hsf1-207ENSMUST00000228371 2102 ntBASIC17.59■□□□□ 0.41
Cdx1P18111 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Cdx1P18111 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Cdx1P18111 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Cdx1P18111 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Cdx1P18111 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Cdx1P18111 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
Cdx1P18111 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC17.58■□□□□ 0.4
Cdx1P18111 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC17.58■□□□□ 0.4
Cdx1P18111 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Cdx1P18111 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Cdx1P18111 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.4
Cdx1P18111 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC17.57■□□□□ 0.4
Cdx1P18111 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdx1P18111 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdx1P18111 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdx1P18111 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Cdx1P18111 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Cdx1P18111 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Cdx1P18111 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Cdx1P18111 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Cdx1P18111 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC17.56■□□□□ 0.4
Cdx1P18111 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdx1P18111 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC17.55■□□□□ 0.4
Cdx1P18111 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdx1P18111 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdx1P18111 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdx1P18111 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Cdx1P18111 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Cdx1P18111 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Cdx1P18111 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Cdx1P18111 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC17.54■□□□□ 0.4
Cdx1P18111 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdx1P18111 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Cdx1P18111 Pcf11-205ENSMUST00000208255 1720 ntBASIC17.54■□□□□ 0.4
Cdx1P18111 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Cdx1P18111 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Cdx1P18111 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdx1P18111 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Cdx1P18111 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Cdx1P18111 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Cdx1P18111 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Cdx1P18111 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Cdx1P18111 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdx1P18111 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cdx1P18111 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Cdx1P18111 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdx1P18111 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdx1P18111 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdx1P18111 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdx1P18111 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cdx1P18111 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Cdx1P18111 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.39
Cdx1P18111 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cdx1P18111 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cdx1P18111 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC17.51■□□□□ 0.39
Cdx1P18111 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cdx1P18111 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cdx1P18111 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cdx1P18111 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC17.51■□□□□ 0.39
Cdx1P18111 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cdx1P18111 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Cdx1P18111 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Cdx1P18111 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Cdx1P18111 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Cdx1P18111 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Cdx1P18111 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC17.5■□□□□ 0.39
Cdx1P18111 Gm42699-201ENSMUST00000198104 1657 ntBASIC17.5■□□□□ 0.39
Cdx1P18111 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Cdx1P18111 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Cdx1P18111 Iqck-206ENSMUST00000208658 2891 ntBASIC17.49■□□□□ 0.39
Cdx1P18111 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Cdx1P18111 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Cdx1P18111 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Cdx1P18111 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC17.48■□□□□ 0.39
Cdx1P18111 Gm32051-202ENSMUST00000197905 2385 ntBASIC17.48■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 11.4 ms