Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
LRRC53A6NM62 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
LRRC53A6NM62 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
LRRC53A6NM62 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC26.29■■□□□ 1.8
LRRC53A6NM62 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC26.28■■□□□ 1.8
LRRC53A6NM62 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC26.28■■□□□ 1.8
LRRC53A6NM62 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
LRRC53A6NM62 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
LRRC53A6NM62 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
LRRC53A6NM62 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
LRRC53A6NM62 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
LRRC53A6NM62 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
LRRC53A6NM62 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
LRRC53A6NM62 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC26.26■■□□□ 1.79
LRRC53A6NM62 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC26.26■■□□□ 1.79
LRRC53A6NM62 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
LRRC53A6NM62 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC26.26■■□□□ 1.79
LRRC53A6NM62 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC26.25■■□□□ 1.79
LRRC53A6NM62 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
LRRC53A6NM62 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
LRRC53A6NM62 AL359258.2-201ENST00000564063 1566 ntBASIC26.25■■□□□ 1.79
LRRC53A6NM62 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC26.25■■□□□ 1.79
LRRC53A6NM62 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
LRRC53A6NM62 RNF166-209ENST00000567844 633 ntTSL 5 BASIC26.25■■□□□ 1.79
LRRC53A6NM62 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC26.25■■□□□ 1.79
LRRC53A6NM62 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
LRRC53A6NM62 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
LRRC53A6NM62 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
LRRC53A6NM62 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
LRRC53A6NM62 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
LRRC53A6NM62 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC26.23■■□□□ 1.79
LRRC53A6NM62 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC26.23■■□□□ 1.79
LRRC53A6NM62 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
LRRC53A6NM62 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
LRRC53A6NM62 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
LRRC53A6NM62 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
LRRC53A6NM62 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
LRRC53A6NM62 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
LRRC53A6NM62 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
LRRC53A6NM62 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
LRRC53A6NM62 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC26.22■■□□□ 1.79
LRRC53A6NM62 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
LRRC53A6NM62 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC26.21■■□□□ 1.79
LRRC53A6NM62 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
LRRC53A6NM62 CR559946.2-201ENST00000623684 991 ntBASIC26.21■■□□□ 1.79
LRRC53A6NM62 AL359504.2-201ENST00000605506 1601 ntBASIC26.21■■□□□ 1.79
LRRC53A6NM62 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
LRRC53A6NM62 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC26.2■■□□□ 1.79
LRRC53A6NM62 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC26.2■■□□□ 1.79
LRRC53A6NM62 MED25-210ENST00000612854 801 ntTSL 5 BASIC26.2■■□□□ 1.78
LRRC53A6NM62 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
LRRC53A6NM62 MED25-214ENST00000622402 642 ntTSL 5 BASIC26.2■■□□□ 1.78
LRRC53A6NM62 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC26.2■■□□□ 1.78
LRRC53A6NM62 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
LRRC53A6NM62 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC26.19■■□□□ 1.78
LRRC53A6NM62 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC26.19■■□□□ 1.78
LRRC53A6NM62 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC26.19■■□□□ 1.78
LRRC53A6NM62 PKM-204ENST00000449901 2526 ntTSL 2 BASIC26.19■■□□□ 1.78
LRRC53A6NM62 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC26.19■■□□□ 1.78
LRRC53A6NM62 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
LRRC53A6NM62 AGPS-202ENST00000409888 815 ntTSL 4 BASIC26.18■■□□□ 1.78
LRRC53A6NM62 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
LRRC53A6NM62 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
LRRC53A6NM62 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC26.18■■□□□ 1.78
LRRC53A6NM62 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
LRRC53A6NM62 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
LRRC53A6NM62 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
LRRC53A6NM62 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC26.17■■□□□ 1.78
LRRC53A6NM62 AC096887.2-201ENST00000623443 1957 ntBASIC26.17■■□□□ 1.78
LRRC53A6NM62 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
LRRC53A6NM62 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
LRRC53A6NM62 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
LRRC53A6NM62 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
LRRC53A6NM62 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC26.16■■□□□ 1.78
LRRC53A6NM62 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
LRRC53A6NM62 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC26.16■■□□□ 1.78
LRRC53A6NM62 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC26.16■■□□□ 1.78
LRRC53A6NM62 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
LRRC53A6NM62 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
LRRC53A6NM62 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
LRRC53A6NM62 SNAI3-AS1-204ENST00000567997 2048 ntBASIC26.15■■□□□ 1.78
LRRC53A6NM62 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
LRRC53A6NM62 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC26.14■■□□□ 1.78
LRRC53A6NM62 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
LRRC53A6NM62 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC26.14■■□□□ 1.78
LRRC53A6NM62 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC26.14■■□□□ 1.78
LRRC53A6NM62 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC26.14■■□□□ 1.78
LRRC53A6NM62 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
LRRC53A6NM62 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC26.13■■□□□ 1.77
LRRC53A6NM62 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
LRRC53A6NM62 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
LRRC53A6NM62 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC26.12■■□□□ 1.77
LRRC53A6NM62 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
LRRC53A6NM62 ABHD17AP4-201ENST00000411545 909 ntBASIC26.12■■□□□ 1.77
LRRC53A6NM62 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
LRRC53A6NM62 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC26.12■■□□□ 1.77
LRRC53A6NM62 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC26.12■■□□□ 1.77
LRRC53A6NM62 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
LRRC53A6NM62 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC26.11■■□□□ 1.77
LRRC53A6NM62 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms