Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A3BPQ9Y5P4 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
COL4A3BPQ9Y5P4 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A3BPQ9Y5P4 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A3BPQ9Y5P4 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
COL4A3BPQ9Y5P4 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A3BPQ9Y5P4 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A3BPQ9Y5P4 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
COL4A3BPQ9Y5P4 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC19.61■□□□□ 0.73
COL4A3BPQ9Y5P4 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A3BPQ9Y5P4 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC19.61■□□□□ 0.73
COL4A3BPQ9Y5P4 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 HR-201ENST00000312841 5351 ntTSL 5 BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 FGFR3P6-201ENST00000457012 610 ntBASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 AL662844.1-201ENST00000546340 181 ntBASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 HLA-J-201ENST00000462773 1622 ntBASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A3BPQ9Y5P4 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A3BPQ9Y5P4 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A3BPQ9Y5P4 AP005117.1-201ENST00000584346 1413 ntBASIC19.59■□□□□ 0.73
COL4A3BPQ9Y5P4 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
COL4A3BPQ9Y5P4 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A3BPQ9Y5P4 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A3BPQ9Y5P4 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A3BPQ9Y5P4 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A3BPQ9Y5P4 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A3BPQ9Y5P4 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A3BPQ9Y5P4 AC005104.2-201ENST00000427818 678 ntBASIC19.59■□□□□ 0.73
COL4A3BPQ9Y5P4 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A3BPQ9Y5P4 FAM197Y8-203ENST00000450145 560 ntBASIC19.59■□□□□ 0.73
COL4A3BPQ9Y5P4 AC122714.2-201ENST00000502787 707 ntBASIC19.59■□□□□ 0.73
COL4A3BPQ9Y5P4 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC19.59■□□□□ 0.73
COL4A3BPQ9Y5P4 TMED1-207ENST00000591695 809 ntTSL 5 BASIC19.59■□□□□ 0.73
COL4A3BPQ9Y5P4 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A3BPQ9Y5P4 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A3BPQ9Y5P4 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
COL4A3BPQ9Y5P4 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A3BPQ9Y5P4 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A3BPQ9Y5P4 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A3BPQ9Y5P4 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A3BPQ9Y5P4 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC19.59■□□□□ 0.73
COL4A3BPQ9Y5P4 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC19.59■□□□□ 0.73
COL4A3BPQ9Y5P4 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL4A3BPQ9Y5P4 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL4A3BPQ9Y5P4 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
COL4A3BPQ9Y5P4 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.58■□□□□ 0.73
COL4A3BPQ9Y5P4 LTB4R2-202ENST00000528054 3092 ntBASIC19.58■□□□□ 0.73
COL4A3BPQ9Y5P4 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL4A3BPQ9Y5P4 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
COL4A3BPQ9Y5P4 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
COL4A3BPQ9Y5P4 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
COL4A3BPQ9Y5P4 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL4A3BPQ9Y5P4 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A3BPQ9Y5P4 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A3BPQ9Y5P4 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC19.58■□□□□ 0.72
COL4A3BPQ9Y5P4 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A3BPQ9Y5P4 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A3BPQ9Y5P4 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
COL4A3BPQ9Y5P4 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
COL4A3BPQ9Y5P4 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC19.58■□□□□ 0.72
COL4A3BPQ9Y5P4 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC19.58■□□□□ 0.72
COL4A3BPQ9Y5P4 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
COL4A3BPQ9Y5P4 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC19.58■□□□□ 0.72
COL4A3BPQ9Y5P4 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A3BPQ9Y5P4 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC19.58■□□□□ 0.72
COL4A3BPQ9Y5P4 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
COL4A3BPQ9Y5P4 FZD10-202ENST00000539839 3282 ntBASIC19.58■□□□□ 0.72
COL4A3BPQ9Y5P4 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC19.58■□□□□ 0.72
COL4A3BPQ9Y5P4 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms