Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PCDHB3Q9Y5E6 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 TNRC18P3-201ENST00000441896 2691 ntBASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 AC106795.1-205ENST00000512851 1056 ntBASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PCDHB3Q9Y5E6 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 AD000864.1-201ENST00000624076 2295 ntBASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 MTATP6P19-201ENST00000413797 659 ntBASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 SAPCD2P3-201ENST00000455031 850 ntBASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 AC068472.1-201ENST00000474589 881 ntBASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 AC084018.2-201ENST00000613093 2607 ntBASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PCDHB3Q9Y5E6 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 AC099343.3-201ENST00000605834 2503 ntBASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 NUS1P2-201ENST00000417358 873 ntBASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.17■□□□□ 0.34
PCDHB3Q9Y5E6 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms