Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 MTDHP3-201ENST00000594186 672 ntBASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 AC008608.2-201ENST00000606089 416 ntBASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 GNAS-203ENST00000306120 1878 ntBASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 RBM17P3-201ENST00000417687 1192 ntBASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 AC106795.1-205ENST00000512851 1056 ntBASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.54■□□□□ 0.24
PTCHD1Q96NR3 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 AC079781.3-201ENST00000449110 356 ntBASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 IGHV3-52-201ENST00000519770 353 ntBASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 AC109462.3-201ENST00000573934 613 ntBASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 AL121912.1-201ENST00000603683 238 ntBASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 AL031008.1-201ENST00000619963 541 ntBASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 KRT8P10-201ENST00000450021 1447 ntBASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.53■□□□□ 0.24
PTCHD1Q96NR3 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
PTCHD1Q96NR3 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.52■□□□□ 0.24
PTCHD1Q96NR3 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
PTCHD1Q96NR3 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms