Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.82■□□□□ 0.28
VMP1Q96GC9 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.82■□□□□ 0.28
VMP1Q96GC9 TPSP2-201ENST00000561760 610 ntBASIC16.82■□□□□ 0.28
VMP1Q96GC9 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
VMP1Q96GC9 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.82■□□□□ 0.28
VMP1Q96GC9 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.82■□□□□ 0.28
VMP1Q96GC9 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.82■□□□□ 0.28
VMP1Q96GC9 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.82■□□□□ 0.28
VMP1Q96GC9 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
VMP1Q96GC9 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.82■□□□□ 0.28
VMP1Q96GC9 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.82■□□□□ 0.28
VMP1Q96GC9 LINC00602-201ENST00000629776 2065 ntBASIC16.82■□□□□ 0.28
VMP1Q96GC9 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.82■□□□□ 0.28
VMP1Q96GC9 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.82■□□□□ 0.28
VMP1Q96GC9 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
VMP1Q96GC9 AL391005.1-201ENST00000623953 2435 ntBASIC16.81■□□□□ 0.28
VMP1Q96GC9 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VMP1Q96GC9 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
VMP1Q96GC9 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VMP1Q96GC9 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VMP1Q96GC9 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
VMP1Q96GC9 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VMP1Q96GC9 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
VMP1Q96GC9 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.81■□□□□ 0.28
VMP1Q96GC9 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VMP1Q96GC9 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
VMP1Q96GC9 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VMP1Q96GC9 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.81■□□□□ 0.28
VMP1Q96GC9 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
VMP1Q96GC9 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC16.81■□□□□ 0.28
VMP1Q96GC9 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.81■□□□□ 0.28
VMP1Q96GC9 LINC00265-3P-201ENST00000447588 903 ntBASIC16.81■□□□□ 0.28
VMP1Q96GC9 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VMP1Q96GC9 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.81■□□□□ 0.28
VMP1Q96GC9 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC16.81■□□□□ 0.28
VMP1Q96GC9 AC009154.2-201ENST00000621177 724 ntBASIC16.81■□□□□ 0.28
VMP1Q96GC9 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.81■□□□□ 0.28
VMP1Q96GC9 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.81■□□□□ 0.28
VMP1Q96GC9 AC138028.4-201ENST00000564984 1845 ntBASIC16.81■□□□□ 0.28
VMP1Q96GC9 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VMP1Q96GC9 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VMP1Q96GC9 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
VMP1Q96GC9 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.81■□□□□ 0.28
VMP1Q96GC9 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
VMP1Q96GC9 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.81■□□□□ 0.28
VMP1Q96GC9 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.81■□□□□ 0.28
VMP1Q96GC9 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VMP1Q96GC9 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
VMP1Q96GC9 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VMP1Q96GC9 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
VMP1Q96GC9 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.81■□□□□ 0.28
VMP1Q96GC9 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VMP1Q96GC9 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VMP1Q96GC9 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.8■□□□□ 0.28
VMP1Q96GC9 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VMP1Q96GC9 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
VMP1Q96GC9 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
VMP1Q96GC9 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
VMP1Q96GC9 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.8■□□□□ 0.28
VMP1Q96GC9 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VMP1Q96GC9 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.8■□□□□ 0.28
VMP1Q96GC9 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VMP1Q96GC9 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VMP1Q96GC9 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
VMP1Q96GC9 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC16.8■□□□□ 0.28
VMP1Q96GC9 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VMP1Q96GC9 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VMP1Q96GC9 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
VMP1Q96GC9 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
VMP1Q96GC9 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.8■□□□□ 0.28
VMP1Q96GC9 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.8■□□□□ 0.28
VMP1Q96GC9 KRT18P65-201ENST00000439811 1286 ntBASIC16.8■□□□□ 0.28
VMP1Q96GC9 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.8■□□□□ 0.28
VMP1Q96GC9 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.8■□□□□ 0.28
VMP1Q96GC9 TOB2P1-201ENST00000469761 992 ntBASIC16.8■□□□□ 0.28
VMP1Q96GC9 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.8■□□□□ 0.28
VMP1Q96GC9 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
VMP1Q96GC9 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.8■□□□□ 0.28
VMP1Q96GC9 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VMP1Q96GC9 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
VMP1Q96GC9 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VMP1Q96GC9 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.8■□□□□ 0.28
VMP1Q96GC9 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
VMP1Q96GC9 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VMP1Q96GC9 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VMP1Q96GC9 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms